Hb_000008_290

Information

Type -
Description -
Location Contig8: 389740-401126
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22080g
description hypothetical protein
nr
ID XP_012064818.1
description PREDICTED: protein SAND [Jatropha curcas]
swissprot
ID Q17QV2
description Vacuolar fusion protein MON1 homolog A OS=Bos taurus GN=MON1A PE=2 SV=1
trembl
ID A0A067L9X7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05515 PE=4 SV=1
Gene Ontology
ID GO:0005623
description protein sand

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58688: 390321-400822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_290 0.0 - - PREDICTED: protein SAND [Jatropha curcas]
2 Hb_002815_030 0.047090523 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
3 Hb_000592_030 0.0579106403 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
4 Hb_000890_060 0.0579481215 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
5 Hb_000613_050 0.0593771128 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
6 Hb_000617_180 0.0604051976 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_123903_010 0.064978971 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
8 Hb_000590_050 0.0667540641 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
9 Hb_001343_040 0.0672687148 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
10 Hb_012395_140 0.068176914 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
11 Hb_001449_040 0.0682367487 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
12 Hb_007426_110 0.0685436429 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
13 Hb_004935_030 0.0686903919 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
14 Hb_002681_090 0.0690251376 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
15 Hb_009270_020 0.0693164701 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
16 Hb_012733_030 0.0700586261 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
17 Hb_007441_130 0.0702147145 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000983_150 0.0709656776 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
19 Hb_000579_230 0.0729823128 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
20 Hb_001655_030 0.0735924278 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_290 Hb_000008_290 Hb_002815_030 Hb_002815_030 Hb_000008_290--Hb_002815_030 Hb_000592_030 Hb_000592_030 Hb_000008_290--Hb_000592_030 Hb_000890_060 Hb_000890_060 Hb_000008_290--Hb_000890_060 Hb_000613_050 Hb_000613_050 Hb_000008_290--Hb_000613_050 Hb_000617_180 Hb_000617_180 Hb_000008_290--Hb_000617_180 Hb_123903_010 Hb_123903_010 Hb_000008_290--Hb_123903_010 Hb_001343_040 Hb_001343_040 Hb_002815_030--Hb_001343_040 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_002815_030--Hb_012395_140 Hb_000395_070 Hb_000395_070 Hb_002815_030--Hb_000395_070 Hb_002815_030--Hb_000592_030 Hb_000592_030--Hb_000613_050 Hb_020378_030 Hb_020378_030 Hb_000592_030--Hb_020378_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_000590_050 Hb_000590_050 Hb_000890_060--Hb_000590_050 Hb_000327_270 Hb_000327_270 Hb_000890_060--Hb_000327_270 Hb_001814_030 Hb_001814_030 Hb_000890_060--Hb_001814_030 Hb_007426_110 Hb_007426_110 Hb_000890_060--Hb_007426_110 Hb_000890_060--Hb_020378_030 Hb_000613_050--Hb_001343_040 Hb_002213_070 Hb_002213_070 Hb_000613_050--Hb_002213_070 Hb_001199_100 Hb_001199_100 Hb_000613_050--Hb_001199_100 Hb_000613_050--Hb_002815_030 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000347_070 Hb_000347_070 Hb_000617_180--Hb_000347_070 Hb_002375_010 Hb_002375_010 Hb_000617_180--Hb_002375_010 Hb_004619_030 Hb_004619_030 Hb_000617_180--Hb_004619_030 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_143629_110 Hb_143629_110 Hb_123903_010--Hb_143629_110 Hb_009175_020 Hb_009175_020 Hb_123903_010--Hb_009175_020 Hb_123903_010--Hb_002815_030 Hb_000975_040 Hb_000975_040 Hb_123903_010--Hb_000975_040 Hb_000390_320 Hb_000390_320 Hb_123903_010--Hb_000390_320 Hb_032202_200 Hb_032202_200 Hb_123903_010--Hb_032202_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.70351 6.10282 5.34884 6.89492 7.23302 9.86475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.80141 4.64104 6.06154 9.64087 7.94471

CAGE analysis