Hb_000008_320

Information

Type -
Description -
Location Contig8: 410458-410997
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01960g
description POPTRDRAFT_723531; hypothetical protein
nr
ID XP_012064819.1
description PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LII0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05516 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58690: 410206-411231
cDNA
(Sanger)
(ID:Location)		 031_M10.ab1: 410286-411108

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_320 0.0 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
2 Hb_002447_030 0.075818063 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
3 Hb_002529_100 0.0946121165 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
4 Hb_000085_200 0.1046150355 - - ATP synthase subunit H protein [Hevea brasiliensis]
5 Hb_000926_290 0.1051422503 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001722_040 0.1114313792 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
7 Hb_003050_230 0.1125387912 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001999_120 0.1131813361 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
9 Hb_024650_020 0.117352455 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
10 Hb_084849_020 0.1175502332 - - ARF GTPase activator, putative [Ricinus communis]
11 Hb_001623_240 0.1177520405 - - hypothetical protein VITISV_004933 [Vitis vinifera]
12 Hb_000282_060 0.1210976412 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
13 Hb_001711_030 0.121489117 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
14 Hb_118977_020 0.1215438594 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
15 Hb_022250_040 0.1215899224 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
16 Hb_000412_110 0.1218628729 - - Rop4 [Hevea brasiliensis]
17 Hb_001366_230 0.1219794146 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001951_110 0.1226474988 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
19 Hb_000634_050 0.1234815469 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
20 Hb_000878_170 0.1240371899 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000008_320 Hb_000008_320 Hb_002447_030 Hb_002447_030 Hb_000008_320--Hb_002447_030 Hb_002529_100 Hb_002529_100 Hb_000008_320--Hb_002529_100 Hb_000085_200 Hb_000085_200 Hb_000008_320--Hb_000085_200 Hb_000926_290 Hb_000926_290 Hb_000008_320--Hb_000926_290 Hb_001722_040 Hb_001722_040 Hb_000008_320--Hb_001722_040 Hb_003050_230 Hb_003050_230 Hb_000008_320--Hb_003050_230 Hb_000045_190 Hb_000045_190 Hb_002447_030--Hb_000045_190 Hb_024650_020 Hb_024650_020 Hb_002447_030--Hb_024650_020 Hb_000634_050 Hb_000634_050 Hb_002447_030--Hb_000634_050 Hb_002447_030--Hb_001722_040 Hb_000362_210 Hb_000362_210 Hb_002447_030--Hb_000362_210 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_011609_180 Hb_011609_180 Hb_000085_200--Hb_011609_180 Hb_000085_200--Hb_000634_050 Hb_000085_200--Hb_002447_030 Hb_000085_200--Hb_002529_100 Hb_000417_110 Hb_000417_110 Hb_000085_200--Hb_000417_110 Hb_003226_150 Hb_003226_150 Hb_000926_290--Hb_003226_150 Hb_000926_290--Hb_002529_100 Hb_003581_090 Hb_003581_090 Hb_000926_290--Hb_003581_090 Hb_008695_190 Hb_008695_190 Hb_000926_290--Hb_008695_190 Hb_000521_150 Hb_000521_150 Hb_000926_290--Hb_000521_150 Hb_183963_020 Hb_183963_020 Hb_001722_040--Hb_183963_020 Hb_025087_010 Hb_025087_010 Hb_001722_040--Hb_025087_010 Hb_001999_120 Hb_001999_120 Hb_001722_040--Hb_001999_120 Hb_001366_230 Hb_001366_230 Hb_001722_040--Hb_001366_230 Hb_003038_180 Hb_003038_180 Hb_001722_040--Hb_003038_180 Hb_084849_020 Hb_084849_020 Hb_003050_230--Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_003050_230--Hb_001369_050 Hb_005686_110 Hb_005686_110 Hb_003050_230--Hb_005686_110 Hb_001437_220 Hb_001437_220 Hb_003050_230--Hb_001437_220 Hb_092100_020 Hb_092100_020 Hb_003050_230--Hb_092100_020 Hb_000061_330 Hb_000061_330 Hb_003050_230--Hb_000061_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.2353 18.1987 12.1164 20.0966 49.8139 60.5245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.796 91.9864 61.8498 6.85172 3.36375

CAGE analysis