Hb_000008_360

Information

Type -
Description -
Location Contig8: 442786-444305
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22050g
description hypothetical protein
nr
ID XP_006384901.1
description hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GGS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22050g PE=4 SV=1
Gene Ontology
ID GO:0031225
description hypothetical protein POPTR_0004s22050g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58694: 442658-442973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_360 0.0 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
2 Hb_000390_110 0.1405000072 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
3 Hb_002836_120 0.1415560992 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
4 Hb_001056_030 0.1788660817 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
5 Hb_140439_010 0.1800122669 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
6 Hb_000005_180 0.1834350114 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010812_100 0.1867910756 - - phosphate transporter [Manihot esculenta]
8 Hb_001435_020 0.1893250073 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
9 Hb_000575_030 0.1919016072 - - unnamed protein product [Vitis vinifera]
10 Hb_000877_080 0.1948931648 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
11 Hb_000935_030 0.1950874479 - - Squalene monooxygenase, putative [Ricinus communis]
12 Hb_003349_030 0.2048484487 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
13 Hb_004093_020 0.2086033431 - - Calcium-binding EF-hand family protein [Theobroma cacao]
14 Hb_000160_180 0.2113648136 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
15 Hb_004162_260 0.2117536662 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
16 Hb_014834_130 0.2125966725 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
17 Hb_002972_010 0.2130163874 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
18 Hb_000429_100 0.213872111 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
19 Hb_131181_010 0.2139908494 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
20 Hb_003849_150 0.2143362082 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_360 Hb_000008_360 Hb_000390_110 Hb_000390_110 Hb_000008_360--Hb_000390_110 Hb_002836_120 Hb_002836_120 Hb_000008_360--Hb_002836_120 Hb_001056_030 Hb_001056_030 Hb_000008_360--Hb_001056_030 Hb_140439_010 Hb_140439_010 Hb_000008_360--Hb_140439_010 Hb_000005_180 Hb_000005_180 Hb_000008_360--Hb_000005_180 Hb_010812_100 Hb_010812_100 Hb_000008_360--Hb_010812_100 Hb_000390_110--Hb_002836_120 Hb_000575_030 Hb_000575_030 Hb_000390_110--Hb_000575_030 Hb_000622_240 Hb_000622_240 Hb_000390_110--Hb_000622_240 Hb_001435_020 Hb_001435_020 Hb_000390_110--Hb_001435_020 Hb_014834_130 Hb_014834_130 Hb_000390_110--Hb_014834_130 Hb_002836_120--Hb_000005_180 Hb_001488_030 Hb_001488_030 Hb_002836_120--Hb_001488_030 Hb_001329_090 Hb_001329_090 Hb_002836_120--Hb_001329_090 Hb_169116_010 Hb_169116_010 Hb_002836_120--Hb_169116_010 Hb_011330_020 Hb_011330_020 Hb_001056_030--Hb_011330_020 Hb_000877_080 Hb_000877_080 Hb_001056_030--Hb_000877_080 Hb_000429_040 Hb_000429_040 Hb_001056_030--Hb_000429_040 Hb_000394_180 Hb_000394_180 Hb_001056_030--Hb_000394_180 Hb_002972_010 Hb_002972_010 Hb_001056_030--Hb_002972_010 Hb_000413_240 Hb_000413_240 Hb_001056_030--Hb_000413_240 Hb_140439_010--Hb_002836_120 Hb_000331_460 Hb_000331_460 Hb_140439_010--Hb_000331_460 Hb_140439_010--Hb_010812_100 Hb_140439_010--Hb_000005_180 Hb_140439_010--Hb_169116_010 Hb_000005_180--Hb_001488_030 Hb_000005_180--Hb_001329_090 Hb_000005_180--Hb_169116_010 Hb_003077_150 Hb_003077_150 Hb_000005_180--Hb_003077_150 Hb_000442_040 Hb_000442_040 Hb_000005_180--Hb_000442_040 Hb_010812_100--Hb_000005_180 Hb_004093_020 Hb_004093_020 Hb_010812_100--Hb_004093_020 Hb_010812_100--Hb_002836_120 Hb_010812_100--Hb_169116_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2901 1.89267 21.5265 14.7297 3.19862 4.35125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4997 28.3893 8.95864 0.337146 20.4183

CAGE analysis