Hb_000008_380

Information

Type -
Description -
Location Contig8: 461066-467486
Sequence    

Annotation

kegg
ID rcu:RCOM_0154140
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002530283.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9SX31
description Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1
trembl
ID B9SWB4
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0154140 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58698: 463874-465152 , PASA_asmbl_58700: 465216-465771 , PASA_asmbl_58701: 466033-467529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_380 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000878_140 0.1946005205 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
3 Hb_000155_090 0.2037095349 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
4 Hb_014720_010 0.2069366981 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005375_050 0.2103521629 - - inorganic pyrophosphatase, putative [Ricinus communis]
6 Hb_000130_450 0.2131209177 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011512_160 0.2188163902 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000487_120 0.2235282988 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000173_050 0.228162737 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
10 Hb_000200_200 0.2293810169 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
11 Hb_003399_100 0.2396915635 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
12 Hb_000352_200 0.2419277484 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
13 Hb_000189_540 0.248799592 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
14 Hb_005656_190 0.2488052255 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
15 Hb_000008_400 0.2517108502 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
16 Hb_000529_150 0.2559927248 - - protein with unknown function [Ricinus communis]
17 Hb_009707_030 0.256631716 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
18 Hb_000152_210 0.2566492429 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000340_500 0.2576296678 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
20 Hb_032717_020 0.2579363168 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_380 Hb_000008_380 Hb_000878_140 Hb_000878_140 Hb_000008_380--Hb_000878_140 Hb_000155_090 Hb_000155_090 Hb_000008_380--Hb_000155_090 Hb_014720_010 Hb_014720_010 Hb_000008_380--Hb_014720_010 Hb_005375_050 Hb_005375_050 Hb_000008_380--Hb_005375_050 Hb_000130_450 Hb_000130_450 Hb_000008_380--Hb_000130_450 Hb_011512_160 Hb_011512_160 Hb_000008_380--Hb_011512_160 Hb_001545_070 Hb_001545_070 Hb_000878_140--Hb_001545_070 Hb_007943_060 Hb_007943_060 Hb_000878_140--Hb_007943_060 Hb_007904_240 Hb_007904_240 Hb_000878_140--Hb_007904_240 Hb_000878_140--Hb_014720_010 Hb_000487_120 Hb_000487_120 Hb_000878_140--Hb_000487_120 Hb_000189_540 Hb_000189_540 Hb_000155_090--Hb_000189_540 Hb_007441_170 Hb_007441_170 Hb_000155_090--Hb_007441_170 Hb_020805_060 Hb_020805_060 Hb_000155_090--Hb_020805_060 Hb_000152_210 Hb_000152_210 Hb_000155_090--Hb_000152_210 Hb_000352_200 Hb_000352_200 Hb_000155_090--Hb_000352_200 Hb_000011_300 Hb_000011_300 Hb_000155_090--Hb_000011_300 Hb_014720_010--Hb_000130_450 Hb_014720_010--Hb_005375_050 Hb_014720_010--Hb_011512_160 Hb_004129_160 Hb_004129_160 Hb_014720_010--Hb_004129_160 Hb_003399_100 Hb_003399_100 Hb_005375_050--Hb_003399_100 Hb_118282_010 Hb_118282_010 Hb_005375_050--Hb_118282_010 Hb_002045_190 Hb_002045_190 Hb_005375_050--Hb_002045_190 Hb_089889_010 Hb_089889_010 Hb_005375_050--Hb_089889_010 Hb_004116_120 Hb_004116_120 Hb_005375_050--Hb_004116_120 Hb_000200_200 Hb_000200_200 Hb_000130_450--Hb_000200_200 Hb_000130_450--Hb_005375_050 Hb_005656_190 Hb_005656_190 Hb_000130_450--Hb_005656_190 Hb_000027_040 Hb_000027_040 Hb_000130_450--Hb_000027_040 Hb_003055_110 Hb_003055_110 Hb_011512_160--Hb_003055_110 Hb_004116_100 Hb_004116_100 Hb_011512_160--Hb_004116_100 Hb_011512_160--Hb_089889_010 Hb_000740_040 Hb_000740_040 Hb_011512_160--Hb_000740_040 Hb_068194_010 Hb_068194_010 Hb_011512_160--Hb_068194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0946611 0.105272 4.36409 2.30861 0.0668609 0.0135219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01651 3.417 2.41424 0.377196 0.202896

CAGE analysis