Hb_000008_430

Information

Type -
Description -
Location Contig8: 515196-523519
Sequence    

Annotation

kegg
ID rcu:RCOM_0154700
description RNA m5u methyltransferase, putative
nr
ID XP_012064836.1
description PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
swissprot
ID Q8L7S3
description Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana GN=At2g28450 PE=1 SV=1
trembl
ID A0A067L9Z2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05530 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 24 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58711: 521348-522316
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_430 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
2 Hb_005724_050 0.0979597144 - - -
3 Hb_004032_090 0.1046817556 - - PREDICTED: protein AIG1 [Jatropha curcas]
4 Hb_001294_040 0.1195306746 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
5 Hb_007290_070 0.1223573359 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
6 Hb_005539_100 0.1226288399 - - nucleoside transporter, putative [Ricinus communis]
7 Hb_001205_180 0.1240393725 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
8 Hb_083078_010 0.1241956086 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
9 Hb_000421_020 0.132677434 - - ascorbate peroxidase [Hevea brasiliensis]
10 Hb_115513_040 0.1330623776 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000649_300 0.1339705553 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
12 Hb_002874_170 0.1398672328 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
13 Hb_001123_190 0.1402862096 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
14 Hb_002343_020 0.1405148214 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
15 Hb_004800_130 0.1431345919 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
16 Hb_011381_070 0.1439729662 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
17 Hb_002073_020 0.1447057265 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
18 Hb_000732_230 0.1457071102 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
19 Hb_001951_240 0.1457120671 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
20 Hb_001409_050 0.1464381433 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000008_430 Hb_000008_430 Hb_005724_050 Hb_005724_050 Hb_000008_430--Hb_005724_050 Hb_004032_090 Hb_004032_090 Hb_000008_430--Hb_004032_090 Hb_001294_040 Hb_001294_040 Hb_000008_430--Hb_001294_040 Hb_007290_070 Hb_007290_070 Hb_000008_430--Hb_007290_070 Hb_005539_100 Hb_005539_100 Hb_000008_430--Hb_005539_100 Hb_001205_180 Hb_001205_180 Hb_000008_430--Hb_001205_180 Hb_001409_050 Hb_001409_050 Hb_005724_050--Hb_001409_050 Hb_000732_230 Hb_000732_230 Hb_005724_050--Hb_000732_230 Hb_005724_050--Hb_001205_180 Hb_001951_240 Hb_001951_240 Hb_005724_050--Hb_001951_240 Hb_002609_190 Hb_002609_190 Hb_005724_050--Hb_002609_190 Hb_002343_020 Hb_002343_020 Hb_004032_090--Hb_002343_020 Hb_001123_190 Hb_001123_190 Hb_004032_090--Hb_001123_190 Hb_000009_150 Hb_000009_150 Hb_004032_090--Hb_000009_150 Hb_048476_040 Hb_048476_040 Hb_004032_090--Hb_048476_040 Hb_006052_060 Hb_006052_060 Hb_004032_090--Hb_006052_060 Hb_001158_120 Hb_001158_120 Hb_001294_040--Hb_001158_120 Hb_011381_070 Hb_011381_070 Hb_001294_040--Hb_011381_070 Hb_014361_170 Hb_014361_170 Hb_001294_040--Hb_014361_170 Hb_000366_050 Hb_000366_050 Hb_001294_040--Hb_000366_050 Hb_000035_490 Hb_000035_490 Hb_001294_040--Hb_000035_490 Hb_001499_070 Hb_001499_070 Hb_007290_070--Hb_001499_070 Hb_001408_020 Hb_001408_020 Hb_007290_070--Hb_001408_020 Hb_083078_010 Hb_083078_010 Hb_007290_070--Hb_083078_010 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_187005_010 Hb_187005_010 Hb_007290_070--Hb_187005_010 Hb_172676_010 Hb_172676_010 Hb_005539_100--Hb_172676_010 Hb_005539_100--Hb_011381_070 Hb_005539_100--Hb_001158_120 Hb_005539_100--Hb_000366_050 Hb_002073_020 Hb_002073_020 Hb_005539_100--Hb_002073_020 Hb_000369_070 Hb_000369_070 Hb_005539_100--Hb_000369_070 Hb_004800_130 Hb_004800_130 Hb_001205_180--Hb_004800_130 Hb_001133_090 Hb_001133_090 Hb_001205_180--Hb_001133_090 Hb_002553_010 Hb_002553_010 Hb_001205_180--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_001205_180--Hb_010775_010 Hb_001488_210 Hb_001488_210 Hb_001205_180--Hb_001488_210 Hb_001205_180--Hb_083078_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25514 13.4249 11.8061 5.19287 1.97116 1.12657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.762835 0.354704 0.33822 8.08184 4.90269

CAGE analysis