Hb_000008_440

Information

Type -
Description -
Location Contig8: 524942-528353
Sequence    

Annotation

kegg
ID vvi:100260106
description probable E3 ubiquitin-protein ligase LOG2
nr
ID XP_012064838.1
description PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
swissprot
ID Q9S752
description Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1
trembl
ID A0A067LIJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05531 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable e3 ubiquitin-protein ligase log2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58714: 525060-527300 , PASA_asmbl_58715: 527846-528241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_440 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
2 Hb_032202_040 0.0698455347 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
3 Hb_001404_110 0.0754947479 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
4 Hb_003657_010 0.0839943069 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002542_110 0.0842851975 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
6 Hb_000497_300 0.0850183615 - - peroxisomal membrane protein [Hevea brasiliensis]
7 Hb_010068_080 0.0878268955 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
8 Hb_000393_020 0.0886364068 - - lipid binding protein, putative [Ricinus communis]
9 Hb_010344_050 0.090579528 - - Adagio 1 -like protein [Gossypium arboreum]
10 Hb_002830_010 0.0916074569 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
11 Hb_005245_100 0.0930426308 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
12 Hb_004787_050 0.0930607737 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
13 Hb_004117_260 0.0930608171 - - conserved hypothetical protein [Ricinus communis]
14 Hb_066920_030 0.0931334467 - - PREDICTED: adagio protein 1 [Jatropha curcas]
15 Hb_007810_010 0.0932560651 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
16 Hb_003607_130 0.0950719028 - - serine/threonine protein kinase, putative [Ricinus communis]
17 Hb_002311_360 0.0954199146 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
18 Hb_001635_190 0.0958782613 - - RNA m5u methyltransferase, putative [Ricinus communis]
19 Hb_000094_070 0.0964696609 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
20 Hb_001716_040 0.0964849726 - - ribonuclease p/mrp subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000008_440 Hb_000008_440 Hb_032202_040 Hb_032202_040 Hb_000008_440--Hb_032202_040 Hb_001404_110 Hb_001404_110 Hb_000008_440--Hb_001404_110 Hb_003657_010 Hb_003657_010 Hb_000008_440--Hb_003657_010 Hb_002542_110 Hb_002542_110 Hb_000008_440--Hb_002542_110 Hb_000497_300 Hb_000497_300 Hb_000008_440--Hb_000497_300 Hb_010068_080 Hb_010068_080 Hb_000008_440--Hb_010068_080 Hb_001226_140 Hb_001226_140 Hb_032202_040--Hb_001226_140 Hb_001818_100 Hb_001818_100 Hb_032202_040--Hb_001818_100 Hb_007533_040 Hb_007533_040 Hb_032202_040--Hb_007533_040 Hb_000482_040 Hb_000482_040 Hb_032202_040--Hb_000482_040 Hb_000027_260 Hb_000027_260 Hb_032202_040--Hb_000027_260 Hb_066920_030 Hb_066920_030 Hb_001404_110--Hb_066920_030 Hb_001723_100 Hb_001723_100 Hb_001404_110--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_001404_110--Hb_002830_010 Hb_002272_030 Hb_002272_030 Hb_001404_110--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_001404_110--Hb_020178_040 Hb_004117_260 Hb_004117_260 Hb_003657_010--Hb_004117_260 Hb_022256_020 Hb_022256_020 Hb_003657_010--Hb_022256_020 Hb_004208_030 Hb_004208_030 Hb_003657_010--Hb_004208_030 Hb_000197_250 Hb_000197_250 Hb_003657_010--Hb_000197_250 Hb_003657_010--Hb_010068_080 Hb_000640_040 Hb_000640_040 Hb_002542_110--Hb_000640_040 Hb_002542_110--Hb_010068_080 Hb_001716_040 Hb_001716_040 Hb_002542_110--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_002542_110--Hb_002686_090 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180 Hb_010344_050 Hb_010344_050 Hb_000497_300--Hb_010344_050 Hb_004712_130 Hb_004712_130 Hb_000497_300--Hb_004712_130 Hb_001352_020 Hb_001352_020 Hb_000497_300--Hb_001352_020 Hb_000116_260 Hb_000116_260 Hb_000497_300--Hb_000116_260 Hb_164010_030 Hb_164010_030 Hb_000497_300--Hb_164010_030 Hb_001789_150 Hb_001789_150 Hb_000497_300--Hb_001789_150 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_001304_110 Hb_001304_110 Hb_010068_080--Hb_001304_110 Hb_010068_080--Hb_000640_040 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.764 56.0297 44.2139 49.8522 22.5337 27.2552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.6643 39.6284 78.5429 37.4969 59.9997

CAGE analysis