Hb_000009_020

Information

Type -
Description -
Location Contig9: 9021-13867
Sequence    

Annotation

kegg
ID rcu:RCOM_0553440
description ketol-acid reductoisomerase, chloroplast precursor, putative (EC:1.1.1.86)
nr
ID XP_002525115.1
description ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q05758
description Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2
trembl
ID B9SGJ6
description Ketol-acid reductoisomerase OS=Ricinus communis GN=RCOM_0553440 PE=3 SV=1
Gene Ontology
ID GO:0005618
description ketol-acid chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61816: 8997-13859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_020 0.0 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
2 Hb_001953_100 0.0836504158 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
3 Hb_000056_310 0.0870298468 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
4 Hb_030131_020 0.1128434468 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
5 Hb_000035_210 0.1146878108 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
6 Hb_003683_030 0.1169922183 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
7 Hb_004837_210 0.1194302234 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
8 Hb_002044_020 0.1238435017 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
9 Hb_005618_080 0.1244236641 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
10 Hb_000749_200 0.1250839268 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
11 Hb_001001_120 0.1270965847 - - protein phosphatase, putative [Ricinus communis]
12 Hb_007894_190 0.1276244459 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
13 Hb_029695_070 0.1276981178 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
14 Hb_006252_030 0.127968964 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
15 Hb_002400_010 0.1306090355 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
16 Hb_000212_250 0.1310217592 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000808_210 0.1326082088 - - hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
18 Hb_000094_100 0.1332279651 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
19 Hb_001789_160 0.1336393028 - - PREDICTED: putative transporter arsB [Jatropha curcas]
20 Hb_150651_020 0.1354809519 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000009_020 Hb_000009_020 Hb_001953_100 Hb_001953_100 Hb_000009_020--Hb_001953_100 Hb_000056_310 Hb_000056_310 Hb_000009_020--Hb_000056_310 Hb_030131_020 Hb_030131_020 Hb_000009_020--Hb_030131_020 Hb_000035_210 Hb_000035_210 Hb_000009_020--Hb_000035_210 Hb_003683_030 Hb_003683_030 Hb_000009_020--Hb_003683_030 Hb_004837_210 Hb_004837_210 Hb_000009_020--Hb_004837_210 Hb_001953_100--Hb_000056_310 Hb_001953_100--Hb_003683_030 Hb_148146_010 Hb_148146_010 Hb_001953_100--Hb_148146_010 Hb_001953_100--Hb_004837_210 Hb_001953_100--Hb_000035_210 Hb_000056_310--Hb_148146_010 Hb_006252_030 Hb_006252_030 Hb_000056_310--Hb_006252_030 Hb_005618_080 Hb_005618_080 Hb_000056_310--Hb_005618_080 Hb_000749_200 Hb_000749_200 Hb_000056_310--Hb_000749_200 Hb_004052_070 Hb_004052_070 Hb_030131_020--Hb_004052_070 Hb_000808_210 Hb_000808_210 Hb_030131_020--Hb_000808_210 Hb_001624_040 Hb_001624_040 Hb_030131_020--Hb_001624_040 Hb_029695_070 Hb_029695_070 Hb_030131_020--Hb_029695_070 Hb_001450_020 Hb_001450_020 Hb_030131_020--Hb_001450_020 Hb_000094_100 Hb_000094_100 Hb_000035_210--Hb_000094_100 Hb_000035_210--Hb_000056_310 Hb_002044_020 Hb_002044_020 Hb_000035_210--Hb_002044_020 Hb_000035_210--Hb_004837_210 Hb_003683_030--Hb_000749_200 Hb_001689_050 Hb_001689_050 Hb_003683_030--Hb_001689_050 Hb_003894_060 Hb_003894_060 Hb_003683_030--Hb_003894_060 Hb_003683_030--Hb_004837_210 Hb_001250_040 Hb_001250_040 Hb_003683_030--Hb_001250_040 Hb_004837_210--Hb_148146_010 Hb_004837_210--Hb_000094_100 Hb_012779_080 Hb_012779_080 Hb_004837_210--Hb_012779_080 Hb_002928_030 Hb_002928_030 Hb_004837_210--Hb_002928_030 Hb_005074_050 Hb_005074_050 Hb_004837_210--Hb_005074_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.2735 41.0252 304.896 73.852 47.005 53.811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7909 17.8792 17.208 77.0402 205.391

CAGE analysis