Hb_000009_040

Information

Type -
Description -
Location Contig9: 27231-28973
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_040 0.0 - - -
2 Hb_017711_010 0.1129085513 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
3 Hb_001587_060 0.1169305344 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000236_460 0.1303240415 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
5 Hb_003058_220 0.1312789435 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
6 Hb_005224_050 0.1325954128 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
7 Hb_002293_030 0.1375276026 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
8 Hb_001252_140 0.1444825622 - - catalytic, putative [Ricinus communis]
9 Hb_000199_070 0.1478362517 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008847_020 0.149586772 - - 40S ribosomal protein S17C [Hevea brasiliensis]
11 Hb_004410_010 0.1515890343 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
12 Hb_001610_130 0.1527232566 - - 40S ribosomal protein S30 [Medicago truncatula]
13 Hb_007747_130 0.1537375468 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
14 Hb_003638_080 0.1540809904 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
15 Hb_001053_160 0.1550184933 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
16 Hb_021409_090 0.1551769897 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
17 Hb_001123_120 0.155582292 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
18 Hb_015978_070 0.1560539003 - - -
19 Hb_005463_060 0.1575174615 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
20 Hb_000134_020 0.1579528085 - - thioredoxin-like family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000009_040 Hb_000009_040 Hb_017711_010 Hb_017711_010 Hb_000009_040--Hb_017711_010 Hb_001587_060 Hb_001587_060 Hb_000009_040--Hb_001587_060 Hb_000236_460 Hb_000236_460 Hb_000009_040--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000009_040--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_000009_040--Hb_005224_050 Hb_002293_030 Hb_002293_030 Hb_000009_040--Hb_002293_030 Hb_017711_010--Hb_005224_050 Hb_017711_010--Hb_002293_030 Hb_000193_350 Hb_000193_350 Hb_017711_010--Hb_000193_350 Hb_000175_400 Hb_000175_400 Hb_017711_010--Hb_000175_400 Hb_017711_010--Hb_003058_220 Hb_000345_430 Hb_000345_430 Hb_001587_060--Hb_000345_430 Hb_009659_020 Hb_009659_020 Hb_001587_060--Hb_009659_020 Hb_001587_060--Hb_000236_460 Hb_030565_040 Hb_030565_040 Hb_001587_060--Hb_030565_040 Hb_007520_060 Hb_007520_060 Hb_001587_060--Hb_007520_060 Hb_003549_020 Hb_003549_020 Hb_000236_460--Hb_003549_020 Hb_187083_010 Hb_187083_010 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_097007_010 Hb_097007_010 Hb_000236_460--Hb_097007_010 Hb_000085_330 Hb_000085_330 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120 Hb_000199_070 Hb_000199_070 Hb_003058_220--Hb_000199_070 Hb_003058_220--Hb_005224_050 Hb_002701_050 Hb_002701_050 Hb_003058_220--Hb_002701_050 Hb_000419_130 Hb_000419_130 Hb_003058_220--Hb_000419_130 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350 Hb_000645_190 Hb_000645_190 Hb_003058_220--Hb_000645_190 Hb_005224_050--Hb_000193_350 Hb_005224_050--Hb_000199_070 Hb_003687_020 Hb_003687_020 Hb_005224_050--Hb_003687_020 Hb_005224_050--Hb_002293_030 Hb_011310_060 Hb_011310_060 Hb_002293_030--Hb_011310_060 Hb_008847_020 Hb_008847_020 Hb_002293_030--Hb_008847_020 Hb_002234_210 Hb_002234_210 Hb_002293_030--Hb_002234_210 Hb_000526_150 Hb_000526_150 Hb_002293_030--Hb_000526_150 Hb_000634_050 Hb_000634_050 Hb_002293_030--Hb_000634_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20512 0.0756471 0.208533 1.0139 1.3292 3.56751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.49184 7.37735 2.0453 0.482238 0

CAGE analysis