Hb_000009_070

Information

Type -
Description -
Location Contig9: 67010-71213
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12490g
description hypothetical protein
nr
ID XP_012079069.1
description PREDICTED: globulin-1 S allele [Jatropha curcas]
swissprot
ID Q9SPL4
description Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1
trembl
ID A0A067KHS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12256 PE=4 SV=1
Gene Ontology
ID GO:0045735
description vicilin-like antimicrobial peptides 2-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61825: 67932-68736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_070 0.0 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
2 Hb_010417_010 0.1506206741 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_100873_030 0.1977131832 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
4 Hb_000083_040 0.2003172317 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002073_120 0.2125597381 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
6 Hb_154340_010 0.2143740573 - - truncated nitrate transporter [Fragaria vesca]
7 Hb_000141_240 0.2163861012 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
8 Hb_000995_070 0.2170826615 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_005483_010 0.2281942728 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
10 Hb_018954_010 0.2491822095 - - -
11 Hb_001534_170 0.2508160383 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
12 Hb_007177_010 0.256070522 - - -
13 Hb_060455_010 0.2570242737 - - 50 kDa protein [Hevea brasiliensis]
14 Hb_074238_010 0.2571846559 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
15 Hb_000572_050 0.2586479498 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
16 Hb_005841_030 0.2589079108 - - -
17 Hb_005142_010 0.2591412018 - - -
18 Hb_008839_030 0.260199792 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001403_030 0.2602144373 - - -
20 Hb_000971_060 0.2607746665 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000009_070 Hb_000009_070 Hb_010417_010 Hb_010417_010 Hb_000009_070--Hb_010417_010 Hb_100873_030 Hb_100873_030 Hb_000009_070--Hb_100873_030 Hb_000083_040 Hb_000083_040 Hb_000009_070--Hb_000083_040 Hb_002073_120 Hb_002073_120 Hb_000009_070--Hb_002073_120 Hb_154340_010 Hb_154340_010 Hb_000009_070--Hb_154340_010 Hb_000141_240 Hb_000141_240 Hb_000009_070--Hb_000141_240 Hb_010417_010--Hb_002073_120 Hb_000995_070 Hb_000995_070 Hb_010417_010--Hb_000995_070 Hb_004208_100 Hb_004208_100 Hb_010417_010--Hb_004208_100 Hb_010417_010--Hb_100873_030 Hb_001534_170 Hb_001534_170 Hb_010417_010--Hb_001534_170 Hb_100873_030--Hb_000995_070 Hb_100873_030--Hb_000141_240 Hb_042223_010 Hb_042223_010 Hb_100873_030--Hb_042223_010 Hb_018954_010 Hb_018954_010 Hb_100873_030--Hb_018954_010 Hb_156473_010 Hb_156473_010 Hb_100873_030--Hb_156473_010 Hb_006355_050 Hb_006355_050 Hb_000083_040--Hb_006355_050 Hb_074238_010 Hb_074238_010 Hb_000083_040--Hb_074238_010 Hb_007177_010 Hb_007177_010 Hb_000083_040--Hb_007177_010 Hb_005020_010 Hb_005020_010 Hb_000083_040--Hb_005020_010 Hb_000083_040--Hb_154340_010 Hb_000705_280 Hb_000705_280 Hb_000083_040--Hb_000705_280 Hb_000172_570 Hb_000172_570 Hb_002073_120--Hb_000172_570 Hb_002073_120--Hb_000995_070 Hb_002073_120--Hb_004208_100 Hb_002073_120--Hb_000141_240 Hb_000638_040 Hb_000638_040 Hb_154340_010--Hb_000638_040 Hb_005142_010 Hb_005142_010 Hb_154340_010--Hb_005142_010 Hb_060455_010 Hb_060455_010 Hb_154340_010--Hb_060455_010 Hb_005841_030 Hb_005841_030 Hb_154340_010--Hb_005841_030 Hb_000572_050 Hb_000572_050 Hb_154340_010--Hb_000572_050 Hb_000141_240--Hb_018954_010 Hb_000141_240--Hb_000172_570 Hb_000141_240--Hb_000995_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.870282 0.102417 0.116773 0.158607 0.352588 5.53131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.05532 9.26696 119.533 9.12486 0.345395

CAGE analysis