Hb_000009_080

Information

Type transcription factor
Description TF Family: GRAS
Location Contig9: 84619-92709
Sequence    

Annotation

kegg
ID rcu:RCOM_0553270
description DELLA protein GAIP-B, putative
nr
ID XP_012079070.1
description PREDICTED: scarecrow-like protein 15 [Jatropha curcas]
swissprot
ID O23210
description Scarecrow-like protein 15 OS=Arabidopsis thaliana GN=SCL15 PE=2 SV=3
trembl
ID A0A067K6F5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12257 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61827: 88204-92681 , PASA_asmbl_61828: 90008-91073 , PASA_asmbl_61829: 91999-92258
cDNA
(Sanger)
(ID:Location)		 020_A15.ab1: 84547-85291 , 050_H05.ab1: 84551-85143

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_080 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 15 [Jatropha curcas]
2 Hb_002046_190 0.0947645519 - - calcium-binding family protein [Populus trichocarpa]
3 Hb_000512_060 0.1024416611 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
4 Hb_148025_010 0.1082621625 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
5 Hb_005686_060 0.1110537773 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
6 Hb_109092_010 0.1117322233 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_002835_080 0.112928122 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
8 Hb_001100_060 0.1133113745 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
9 Hb_055488_010 0.1139993334 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
10 Hb_001195_600 0.1155250816 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
11 Hb_000230_200 0.1168177234 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
12 Hb_000671_050 0.116834343 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
13 Hb_000210_230 0.1193945593 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
14 Hb_000988_080 0.1199828094 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002217_240 0.1200648286 - - PREDICTED: F-box protein At5g49610 [Jatropha curcas]
16 Hb_000012_430 0.1204386386 - - calcineurin B, putative [Ricinus communis]
17 Hb_002762_120 0.1211442592 - - PREDICTED: uncharacterized protein LOC105640350 isoform X1 [Jatropha curcas]
18 Hb_020956_020 0.1215214472 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
19 Hb_000127_130 0.1221474246 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
20 Hb_001959_080 0.1228896959 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000009_080 Hb_000009_080 Hb_002046_190 Hb_002046_190 Hb_000009_080--Hb_002046_190 Hb_000512_060 Hb_000512_060 Hb_000009_080--Hb_000512_060 Hb_148025_010 Hb_148025_010 Hb_000009_080--Hb_148025_010 Hb_005686_060 Hb_005686_060 Hb_000009_080--Hb_005686_060 Hb_109092_010 Hb_109092_010 Hb_000009_080--Hb_109092_010 Hb_002835_080 Hb_002835_080 Hb_000009_080--Hb_002835_080 Hb_001100_060 Hb_001100_060 Hb_002046_190--Hb_001100_060 Hb_002762_120 Hb_002762_120 Hb_002046_190--Hb_002762_120 Hb_055488_010 Hb_055488_010 Hb_002046_190--Hb_055488_010 Hb_000699_140 Hb_000699_140 Hb_002046_190--Hb_000699_140 Hb_000012_430 Hb_000012_430 Hb_002046_190--Hb_000012_430 Hb_000181_070 Hb_000181_070 Hb_000512_060--Hb_000181_070 Hb_002105_040 Hb_002105_040 Hb_000512_060--Hb_002105_040 Hb_000230_120 Hb_000230_120 Hb_000512_060--Hb_000230_120 Hb_009178_030 Hb_009178_030 Hb_000512_060--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000512_060--Hb_000175_460 Hb_000035_320 Hb_000035_320 Hb_000512_060--Hb_000035_320 Hb_000120_730 Hb_000120_730 Hb_148025_010--Hb_000120_730 Hb_033594_120 Hb_033594_120 Hb_148025_010--Hb_033594_120 Hb_148025_010--Hb_002835_080 Hb_002477_330 Hb_002477_330 Hb_148025_010--Hb_002477_330 Hb_000671_050 Hb_000671_050 Hb_148025_010--Hb_000671_050 Hb_004705_100 Hb_004705_100 Hb_005686_060--Hb_004705_100 Hb_000045_090 Hb_000045_090 Hb_005686_060--Hb_000045_090 Hb_010172_080 Hb_010172_080 Hb_005686_060--Hb_010172_080 Hb_009773_020 Hb_009773_020 Hb_005686_060--Hb_009773_020 Hb_000510_130 Hb_000510_130 Hb_005686_060--Hb_000510_130 Hb_002078_150 Hb_002078_150 Hb_005686_060--Hb_002078_150 Hb_000109_160 Hb_000109_160 Hb_109092_010--Hb_000109_160 Hb_000245_130 Hb_000245_130 Hb_109092_010--Hb_000245_130 Hb_000127_130 Hb_000127_130 Hb_109092_010--Hb_000127_130 Hb_020956_020 Hb_020956_020 Hb_109092_010--Hb_020956_020 Hb_096563_010 Hb_096563_010 Hb_109092_010--Hb_096563_010 Hb_001252_010 Hb_001252_010 Hb_109092_010--Hb_001252_010 Hb_019280_040 Hb_019280_040 Hb_002835_080--Hb_019280_040 Hb_148644_010 Hb_148644_010 Hb_002835_080--Hb_148644_010 Hb_002182_080 Hb_002182_080 Hb_002835_080--Hb_002182_080 Hb_000010_330 Hb_000010_330 Hb_002835_080--Hb_000010_330 Hb_000959_260 Hb_000959_260 Hb_002835_080--Hb_000959_260 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4648 15.8018 7.6245 23.2457 11.6301 30.8587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8494 32.5754 27.6117 5.87469 13.4813

CAGE analysis