Hb_000009_090

Information

Type transcription factor
Description TF Family: bZIP
Location Contig9: 92833-98570
Sequence    

Annotation

kegg
ID rcu:RCOM_0553250
description G-box-binding factor, putative
nr
ID XP_002525106.1
description G-box-binding factor, putative [Ricinus communis]
swissprot
ID P42774
description G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2
trembl
ID B9SGI7
description G-box-binding factor, putative OS=Ricinus communis GN=RCOM_0553250 PE=4 SV=1
Gene Ontology
ID GO:0005634
description g-box-binding factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61830: 92842-94411
cDNA
(Sanger)
(ID:Location)		 005_P04.ab1: 92842-94411

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_090 0.0 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
2 Hb_003794_010 0.068574011 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
3 Hb_000160_210 0.068767252 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005993_050 0.069833019 - - Protein AFR, putative [Ricinus communis]
5 Hb_007007_060 0.0739268125 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
6 Hb_000853_230 0.0749747776 - - syntaxin, putative [Ricinus communis]
7 Hb_005054_230 0.0820769853 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
8 Hb_001390_110 0.0826889634 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
9 Hb_000029_050 0.0833558419 - - expressed protein, putative [Ricinus communis]
10 Hb_001227_030 0.0837464585 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
11 Hb_156973_010 0.0838567263 - - conserved hypothetical protein [Ricinus communis]
12 Hb_023480_010 0.0845922508 - - cellular nucleic acid binding protein, putative [Ricinus communis]
13 Hb_001936_060 0.0862837722 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
14 Hb_008695_020 0.0865282685 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
15 Hb_000044_040 0.087589859 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
16 Hb_005779_080 0.0880419016 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
17 Hb_003680_150 0.0881408942 - - srpk, putative [Ricinus communis]
18 Hb_004055_150 0.0893861187 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002022_060 0.089436875 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
20 Hb_023386_020 0.0901253525 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_090 Hb_000009_090 Hb_003794_010 Hb_003794_010 Hb_000009_090--Hb_003794_010 Hb_000160_210 Hb_000160_210 Hb_000009_090--Hb_000160_210 Hb_005993_050 Hb_005993_050 Hb_000009_090--Hb_005993_050 Hb_007007_060 Hb_007007_060 Hb_000009_090--Hb_007007_060 Hb_000853_230 Hb_000853_230 Hb_000009_090--Hb_000853_230 Hb_005054_230 Hb_005054_230 Hb_000009_090--Hb_005054_230 Hb_003794_010--Hb_000160_210 Hb_003794_010--Hb_007007_060 Hb_001390_110 Hb_001390_110 Hb_003794_010--Hb_001390_110 Hb_007904_120 Hb_007904_120 Hb_003794_010--Hb_007904_120 Hb_002909_050 Hb_002909_050 Hb_003794_010--Hb_002909_050 Hb_000160_210--Hb_007007_060 Hb_004100_080 Hb_004100_080 Hb_000160_210--Hb_004100_080 Hb_023386_020 Hb_023386_020 Hb_000160_210--Hb_023386_020 Hb_079526_030 Hb_079526_030 Hb_000160_210--Hb_079526_030 Hb_000029_050 Hb_000029_050 Hb_005993_050--Hb_000029_050 Hb_138596_010 Hb_138596_010 Hb_005993_050--Hb_138596_010 Hb_004055_150 Hb_004055_150 Hb_005993_050--Hb_004055_150 Hb_003609_030 Hb_003609_030 Hb_005993_050--Hb_003609_030 Hb_003680_150 Hb_003680_150 Hb_005993_050--Hb_003680_150 Hb_005993_050--Hb_000853_230 Hb_008695_020 Hb_008695_020 Hb_007007_060--Hb_008695_020 Hb_000260_100 Hb_000260_100 Hb_007007_060--Hb_000260_100 Hb_006960_050 Hb_006960_050 Hb_007007_060--Hb_006960_050 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010 Hb_006620_020 Hb_006620_020 Hb_000853_230--Hb_006620_020 Hb_000853_230--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_000853_230--Hb_033720_010 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030 Hb_002107_030 Hb_002107_030 Hb_005054_230--Hb_002107_030 Hb_001369_730 Hb_001369_730 Hb_005054_230--Hb_001369_730 Hb_000930_030 Hb_000930_030 Hb_005054_230--Hb_000930_030 Hb_002890_290 Hb_002890_290 Hb_005054_230--Hb_002890_290 Hb_005116_160 Hb_005116_160 Hb_005054_230--Hb_005116_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.836 11.7936 10.567 7.94761 14.0557 12.9386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2331 10.9184 10.4647 10.7788 12.6365

CAGE analysis