Hb_000009_150

Information

Type -
Description -
Location Contig9: 158970-164198
Sequence    

Annotation

kegg
ID rcu:RCOM_0553180
description carbohydrate transporter, putative
nr
ID XP_002525099.1
description carbohydrate transporter, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SGI0
description Carbohydrate transporter, putative OS=Ricinus communis GN=RCOM_0553180 PE=4 SV=1
Gene Ontology
ID GO:0016021
description major facilitator superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61844: 159073-164111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_150 0.0 - - carbohydrate transporter, putative [Ricinus communis]
2 Hb_003430_070 0.0964236437 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
3 Hb_001433_160 0.108168803 - - phosphatase 2C family protein [Populus trichocarpa]
4 Hb_005080_020 0.1142618509 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
5 Hb_004032_090 0.1149887002 - - PREDICTED: protein AIG1 [Jatropha curcas]
6 Hb_000329_790 0.1150321985 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
7 Hb_048476_040 0.1171634835 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
8 Hb_005064_070 0.1196148206 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
9 Hb_000024_130 0.1225756322 - - conserved hypothetical protein [Ricinus communis]
10 Hb_178818_010 0.1232841334 - - CRINKLY4 related 3, putative [Theobroma cacao]
11 Hb_132840_020 0.1327839109 - - PREDICTED: protein LHY [Jatropha curcas]
12 Hb_054865_050 0.1332662663 - - calcium-dependent protein kinase, putative [Ricinus communis]
13 Hb_006052_060 0.1342527321 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
14 Hb_001722_070 0.1344331216 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
15 Hb_009449_100 0.1345571554 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
16 Hb_001179_010 0.1356907767 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
17 Hb_001357_060 0.1388828795 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
18 Hb_002030_180 0.1392239224 - - ring finger protein, putative [Ricinus communis]
19 Hb_026698_020 0.1408691525 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
20 Hb_007382_100 0.1486684548 - - receptor serine-threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000009_150 Hb_000009_150 Hb_003430_070 Hb_003430_070 Hb_000009_150--Hb_003430_070 Hb_001433_160 Hb_001433_160 Hb_000009_150--Hb_001433_160 Hb_005080_020 Hb_005080_020 Hb_000009_150--Hb_005080_020 Hb_004032_090 Hb_004032_090 Hb_000009_150--Hb_004032_090 Hb_000329_790 Hb_000329_790 Hb_000009_150--Hb_000329_790 Hb_048476_040 Hb_048476_040 Hb_000009_150--Hb_048476_040 Hb_006052_060 Hb_006052_060 Hb_003430_070--Hb_006052_060 Hb_149484_010 Hb_149484_010 Hb_003430_070--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003430_070--Hb_001357_060 Hb_132840_020 Hb_132840_020 Hb_003430_070--Hb_132840_020 Hb_003430_070--Hb_000329_790 Hb_002284_080 Hb_002284_080 Hb_001433_160--Hb_002284_080 Hb_000002_360 Hb_000002_360 Hb_001433_160--Hb_000002_360 Hb_000009_300 Hb_000009_300 Hb_001433_160--Hb_000009_300 Hb_000024_130 Hb_000024_130 Hb_001433_160--Hb_000024_130 Hb_003670_030 Hb_003670_030 Hb_001433_160--Hb_003670_030 Hb_005080_020--Hb_048476_040 Hb_001369_020 Hb_001369_020 Hb_005080_020--Hb_001369_020 Hb_005080_020--Hb_132840_020 Hb_001623_410 Hb_001623_410 Hb_005080_020--Hb_001623_410 Hb_005080_020--Hb_000329_790 Hb_000008_430 Hb_000008_430 Hb_004032_090--Hb_000008_430 Hb_002343_020 Hb_002343_020 Hb_004032_090--Hb_002343_020 Hb_001123_190 Hb_001123_190 Hb_004032_090--Hb_001123_190 Hb_004032_090--Hb_048476_040 Hb_004032_090--Hb_006052_060 Hb_005064_070 Hb_005064_070 Hb_000329_790--Hb_005064_070 Hb_000329_790--Hb_048476_040 Hb_000329_790--Hb_132840_020 Hb_009449_100 Hb_009449_100 Hb_000329_790--Hb_009449_100 Hb_001179_010 Hb_001179_010 Hb_000329_790--Hb_001179_010 Hb_000366_050 Hb_000366_050 Hb_000329_790--Hb_000366_050 Hb_048476_040--Hb_005064_070 Hb_048476_040--Hb_132840_020 Hb_054865_050 Hb_054865_050 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150682 6.33559 5.84626 4.54311 0.0640029 0.173484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.567647 0.658135 0.398022 3.14141 2.85656

CAGE analysis