Hb_000009_160

Information

Type -
Description -
Location Contig9: 165098-167875
Sequence    

Annotation

kegg
ID rcu:RCOM_0553170
description ubiquitin-conjugating enzyme m, putative (EC:6.3.2.19)
nr
ID XP_007047023.1
description RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
swissprot
ID Q9SDY5
description NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1
trembl
ID A0A061DFZ6
description RUB1 conjugating enzyme 1 isoform 2 OS=Theobroma cacao GN=TCM_000453 PE=3 SV=1
Gene Ontology
ID GO:0016874
description nedd8-conjugating enzyme ubc12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61846: 165000-168002 , PASA_asmbl_61847: 165030-167955
cDNA
(Sanger)
(ID:Location)		 032_C01.ab1: 165409-168002 , 038_K16.ab1: 165290-167975

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_160 0.0 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
2 Hb_000671_090 0.0608461115 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
3 Hb_007943_090 0.0619978733 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
4 Hb_000205_270 0.0625170246 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
5 Hb_005431_010 0.065546794 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
6 Hb_016065_010 0.0662214183 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
7 Hb_055062_030 0.0685726423 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
8 Hb_000146_020 0.0719041881 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
9 Hb_000834_270 0.0743779384 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
10 Hb_001998_050 0.0753366222 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
11 Hb_158467_010 0.0754072914 - - transporter, putative [Ricinus communis]
12 Hb_000347_410 0.0772216486 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
13 Hb_002963_010 0.078373101 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
14 Hb_021650_030 0.0787735133 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
15 Hb_029866_040 0.0797870091 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
16 Hb_012675_060 0.0803202744 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
17 Hb_018790_060 0.0808119811 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
18 Hb_007479_020 0.0816129414 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
19 Hb_008289_060 0.0817965583 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
20 Hb_001109_020 0.0821858118 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000009_160 Hb_000009_160 Hb_000671_090 Hb_000671_090 Hb_000009_160--Hb_000671_090 Hb_007943_090 Hb_007943_090 Hb_000009_160--Hb_007943_090 Hb_000205_270 Hb_000205_270 Hb_000009_160--Hb_000205_270 Hb_005431_010 Hb_005431_010 Hb_000009_160--Hb_005431_010 Hb_016065_010 Hb_016065_010 Hb_000009_160--Hb_016065_010 Hb_055062_030 Hb_055062_030 Hb_000009_160--Hb_055062_030 Hb_007479_020 Hb_007479_020 Hb_000671_090--Hb_007479_020 Hb_158467_010 Hb_158467_010 Hb_000671_090--Hb_158467_010 Hb_000979_230 Hb_000979_230 Hb_000671_090--Hb_000979_230 Hb_000270_370 Hb_000270_370 Hb_000671_090--Hb_000270_370 Hb_000834_270 Hb_000834_270 Hb_000671_090--Hb_000834_270 Hb_000146_020 Hb_000146_020 Hb_007943_090--Hb_000146_020 Hb_008289_060 Hb_008289_060 Hb_007943_090--Hb_008289_060 Hb_004586_320 Hb_004586_320 Hb_007943_090--Hb_004586_320 Hb_001998_050 Hb_001998_050 Hb_007943_090--Hb_001998_050 Hb_003376_030 Hb_003376_030 Hb_007943_090--Hb_003376_030 Hb_000205_270--Hb_016065_010 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_001105_070 Hb_001105_070 Hb_005431_010--Hb_001105_070 Hb_029866_040 Hb_029866_040 Hb_005431_010--Hb_029866_040 Hb_000705_210 Hb_000705_210 Hb_005431_010--Hb_000705_210 Hb_000905_200 Hb_000905_200 Hb_005431_010--Hb_000905_200 Hb_009773_020 Hb_009773_020 Hb_005431_010--Hb_009773_020 Hb_016065_010--Hb_005488_010 Hb_008453_090 Hb_008453_090 Hb_016065_010--Hb_008453_090 Hb_016065_010--Hb_055062_030 Hb_009486_130 Hb_009486_130 Hb_016065_010--Hb_009486_130 Hb_055062_030--Hb_005488_010 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_055062_030--Hb_008289_060 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_055062_030--Hb_008453_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.062 66.2937 49.2379 78.03 133.096 140.653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
216.353 249.805 251.074 90.3743 38.8497

CAGE analysis