Hb_000009_210

Information

Type -
Description -
Location Contig9: 192519-195603
Sequence    

Annotation

kegg
ID pop:POPTR_0005s12880g
description hypothetical protein
nr
ID XP_012079092.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
swissprot
ID Q9ZU29
description Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2
trembl
ID A0A067KHT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12271 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61851: 193255-194856 , PASA_asmbl_61852: 195472-195581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_210 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
2 Hb_000390_070 0.0833445866 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
3 Hb_033834_010 0.0881745335 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_000627_080 0.0951797719 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_004137_060 0.0983099764 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
6 Hb_000832_130 0.103529265 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
7 Hb_126643_010 0.1065596667 - - Protein transport protein Sec24C, putative [Ricinus communis]
8 Hb_008247_010 0.1068217238 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_000514_060 0.1082263231 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
10 Hb_001797_050 0.1103411971 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
11 Hb_003938_080 0.111661103 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
12 Hb_003216_080 0.1130304764 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
13 Hb_001930_010 0.1131394774 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
14 Hb_002255_070 0.1143669675 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
15 Hb_175338_020 0.1143734764 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
16 Hb_004204_080 0.1154367718 - - diacylglycerol kinase, theta, putative [Ricinus communis]
17 Hb_007108_030 0.1157067719 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002986_130 0.1161313359 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
19 Hb_003544_100 0.1161339723 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
20 Hb_006316_040 0.1177291319 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_210 Hb_000009_210 Hb_000390_070 Hb_000390_070 Hb_000009_210--Hb_000390_070 Hb_033834_010 Hb_033834_010 Hb_000009_210--Hb_033834_010 Hb_000627_080 Hb_000627_080 Hb_000009_210--Hb_000627_080 Hb_004137_060 Hb_004137_060 Hb_000009_210--Hb_004137_060 Hb_000832_130 Hb_000832_130 Hb_000009_210--Hb_000832_130 Hb_126643_010 Hb_126643_010 Hb_000009_210--Hb_126643_010 Hb_000390_070--Hb_000627_080 Hb_007757_110 Hb_007757_110 Hb_000390_070--Hb_007757_110 Hb_001930_010 Hb_001930_010 Hb_000390_070--Hb_001930_010 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000390_070--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000390_070--Hb_004055_040 Hb_005730_030 Hb_005730_030 Hb_033834_010--Hb_005730_030 Hb_175338_020 Hb_175338_020 Hb_033834_010--Hb_175338_020 Hb_004096_020 Hb_004096_020 Hb_033834_010--Hb_004096_020 Hb_001541_020 Hb_001541_020 Hb_033834_010--Hb_001541_020 Hb_000195_020 Hb_000195_020 Hb_033834_010--Hb_000195_020 Hb_002301_220 Hb_002301_220 Hb_033834_010--Hb_002301_220 Hb_000627_080--Hb_004055_040 Hb_000627_080--Hb_000244_250 Hb_000627_080--Hb_001930_010 Hb_002255_070 Hb_002255_070 Hb_000627_080--Hb_002255_070 Hb_000915_050 Hb_000915_050 Hb_000627_080--Hb_000915_050 Hb_010417_050 Hb_010417_050 Hb_004137_060--Hb_010417_050 Hb_014267_010 Hb_014267_010 Hb_004137_060--Hb_014267_010 Hb_004137_060--Hb_000390_070 Hb_000574_070 Hb_000574_070 Hb_004137_060--Hb_000574_070 Hb_000244_160 Hb_000244_160 Hb_004137_060--Hb_000244_160 Hb_000951_110 Hb_000951_110 Hb_000832_130--Hb_000951_110 Hb_004718_010 Hb_004718_010 Hb_000832_130--Hb_004718_010 Hb_010578_060 Hb_010578_060 Hb_000832_130--Hb_010578_060 Hb_064903_010 Hb_064903_010 Hb_000832_130--Hb_064903_010 Hb_002471_210 Hb_002471_210 Hb_000832_130--Hb_002471_210 Hb_111985_080 Hb_111985_080 Hb_000832_130--Hb_111985_080 Hb_126643_010--Hb_002255_070 Hb_003544_100 Hb_003544_100 Hb_126643_010--Hb_003544_100 Hb_126643_010--Hb_000627_080 Hb_003052_150 Hb_003052_150 Hb_126643_010--Hb_003052_150 Hb_116929_010 Hb_116929_010 Hb_126643_010--Hb_116929_010 Hb_003952_150 Hb_003952_150 Hb_126643_010--Hb_003952_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36091 2.29721 1.05551 0.583945 3.56523 4.05076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.677749 1.47668 3.06096 1.69128 1.07915

CAGE analysis