Hb_000009_240

Information

Type -
Description -
Location Contig9: 260676-261377
Sequence    

Annotation

kegg
ID pmum:103340032
description E3 ubiquitin-protein ligase RNF185-like
nr
ID XP_012079095.1
description PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
swissprot
ID Q09463
description RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
trembl
ID A0A067KA13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12274 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rnf185-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61856: 259959-261563
cDNA
(Sanger)
(ID:Location)		 006_H13.ab1: 259959-261340 , 010_D15.ab1: 259959-261340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_240 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
2 Hb_000318_290 0.083474348 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
3 Hb_002391_270 0.0842212237 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
4 Hb_005914_080 0.0851345967 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
5 Hb_004767_100 0.0879149774 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
6 Hb_003777_310 0.0946912227 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003940_040 0.0991610883 - - conserved hypothetical protein [Ricinus communis]
8 Hb_021238_050 0.0999794498 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000406_080 0.1022670876 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
10 Hb_000023_280 0.1035335191 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
11 Hb_000645_090 0.1039620445 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000608_240 0.1041130074 - - eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein [Populus trichocarpa]
13 Hb_003092_030 0.1041813743 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
14 Hb_005170_040 0.1049660978 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
15 Hb_010142_030 0.1080436258 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_001377_510 0.1082441772 - - ormdl, putative [Ricinus communis]
17 Hb_004032_150 0.108487991 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
18 Hb_144528_010 0.1097234138 - - type II inositol 5-phosphatase, putative [Ricinus communis]
19 Hb_000608_320 0.1097812284 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
20 Hb_003038_210 0.1100380549 - - hypothetical protein B456_006G076400 [Gossypium raimondii]

Gene co-expression network

sample Hb_000009_240 Hb_000009_240 Hb_000318_290 Hb_000318_290 Hb_000009_240--Hb_000318_290 Hb_002391_270 Hb_002391_270 Hb_000009_240--Hb_002391_270 Hb_005914_080 Hb_005914_080 Hb_000009_240--Hb_005914_080 Hb_004767_100 Hb_004767_100 Hb_000009_240--Hb_004767_100 Hb_003777_310 Hb_003777_310 Hb_000009_240--Hb_003777_310 Hb_003940_040 Hb_003940_040 Hb_000009_240--Hb_003940_040 Hb_000318_290--Hb_003777_310 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_000608_320 Hb_000608_320 Hb_000318_290--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_000318_290--Hb_004767_100 Hb_000116_410 Hb_000116_410 Hb_002391_270--Hb_000116_410 Hb_000645_090 Hb_000645_090 Hb_002391_270--Hb_000645_090 Hb_028285_010 Hb_028285_010 Hb_002391_270--Hb_028285_010 Hb_000023_280 Hb_000023_280 Hb_002391_270--Hb_000023_280 Hb_010142_030 Hb_010142_030 Hb_002391_270--Hb_010142_030 Hb_144528_010 Hb_144528_010 Hb_005914_080--Hb_144528_010 Hb_005731_120 Hb_005731_120 Hb_005914_080--Hb_005731_120 Hb_005914_080--Hb_000023_280 Hb_005188_080 Hb_005188_080 Hb_005914_080--Hb_005188_080 Hb_005914_080--Hb_003940_040 Hb_004767_100--Hb_004032_150 Hb_000608_240 Hb_000608_240 Hb_004767_100--Hb_000608_240 Hb_005170_040 Hb_005170_040 Hb_004767_100--Hb_005170_040 Hb_148644_010 Hb_148644_010 Hb_004767_100--Hb_148644_010 Hb_000205_300 Hb_000205_300 Hb_004767_100--Hb_000205_300 Hb_002445_120 Hb_002445_120 Hb_003777_310--Hb_002445_120 Hb_003777_310--Hb_005170_040 Hb_023001_060 Hb_023001_060 Hb_003777_310--Hb_023001_060 Hb_003777_310--Hb_000608_320 Hb_003777_310--Hb_004032_150 Hb_099878_030 Hb_099878_030 Hb_003940_040--Hb_099878_030 Hb_003940_040--Hb_010142_030 Hb_000392_190 Hb_000392_190 Hb_003940_040--Hb_000392_190 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_003940_040--Hb_000023_280 Hb_000140_280 Hb_000140_280 Hb_003940_040--Hb_000140_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5559 32.4531 13.9331 63.0009 38.8663 60.7644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.076 46.1829 45.5699 39.3548 17.5473

CAGE analysis