Hb_000009_270

Information

Type -
Description -
Location Contig9: 289788-290357
Sequence    

Annotation

kegg
ID rcu:RCOM_0411620
description Calmodulin, putative
nr
ID XP_002533274.1
description Calmodulin, putative [Ricinus communis]
swissprot
ID Q8L3R2
description Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2
trembl
ID B9T4V5
description Calmodulin, putative OS=Ricinus communis GN=RCOM_0411620 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml41

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61859: 289818-290397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_270 0.0 - - Calmodulin, putative [Ricinus communis]
2 Hb_002609_120 0.0393009295 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
3 Hb_001021_120 0.0401361737 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
4 Hb_032920_020 0.0497475957 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
5 Hb_017434_010 0.0592154605 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
6 Hb_098315_060 0.0602489098 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
7 Hb_001674_010 0.0669505622 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
8 Hb_001638_200 0.0671484837 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
9 Hb_152910_050 0.0673206956 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
10 Hb_009486_050 0.067625057 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
11 Hb_000483_450 0.0765086807 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
12 Hb_003894_110 0.0777609472 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
13 Hb_000134_130 0.0784387617 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
14 Hb_001080_190 0.0813441602 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
15 Hb_031321_020 0.0817196119 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
16 Hb_000028_190 0.0830794484 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
17 Hb_007922_030 0.0841097259 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
18 Hb_040852_010 0.087356647 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001544_090 0.0895516279 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
20 Hb_000156_110 0.0902853528 - - Uncharacterized protein TCM_029490 [Theobroma cacao]

Gene co-expression network

sample Hb_000009_270 Hb_000009_270 Hb_002609_120 Hb_002609_120 Hb_000009_270--Hb_002609_120 Hb_001021_120 Hb_001021_120 Hb_000009_270--Hb_001021_120 Hb_032920_020 Hb_032920_020 Hb_000009_270--Hb_032920_020 Hb_017434_010 Hb_017434_010 Hb_000009_270--Hb_017434_010 Hb_098315_060 Hb_098315_060 Hb_000009_270--Hb_098315_060 Hb_001674_010 Hb_001674_010 Hb_000009_270--Hb_001674_010 Hb_002609_120--Hb_032920_020 Hb_001638_200 Hb_001638_200 Hb_002609_120--Hb_001638_200 Hb_009486_050 Hb_009486_050 Hb_002609_120--Hb_009486_050 Hb_000156_110 Hb_000156_110 Hb_002609_120--Hb_000156_110 Hb_002609_120--Hb_001021_120 Hb_031321_020 Hb_031321_020 Hb_001021_120--Hb_031321_020 Hb_000134_130 Hb_000134_130 Hb_001021_120--Hb_000134_130 Hb_007922_030 Hb_007922_030 Hb_001021_120--Hb_007922_030 Hb_152910_050 Hb_152910_050 Hb_001021_120--Hb_152910_050 Hb_001021_120--Hb_098315_060 Hb_032920_020--Hb_001674_010 Hb_000028_190 Hb_000028_190 Hb_032920_020--Hb_000028_190 Hb_032920_020--Hb_001638_200 Hb_002150_090 Hb_002150_090 Hb_032920_020--Hb_002150_090 Hb_000103_220 Hb_000103_220 Hb_017434_010--Hb_000103_220 Hb_017434_010--Hb_098315_060 Hb_017434_010--Hb_152910_050 Hb_010449_010 Hb_010449_010 Hb_017434_010--Hb_010449_010 Hb_017434_010--Hb_001021_120 Hb_098315_060--Hb_152910_050 Hb_040852_010 Hb_040852_010 Hb_098315_060--Hb_040852_010 Hb_098315_060--Hb_000134_130 Hb_003894_110 Hb_003894_110 Hb_098315_060--Hb_003894_110 Hb_098315_060--Hb_000103_220 Hb_001095_020 Hb_001095_020 Hb_001674_010--Hb_001095_020 Hb_001674_010--Hb_000028_190 Hb_001674_010--Hb_002150_090 Hb_002066_110 Hb_002066_110 Hb_001674_010--Hb_002066_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.360278 5.4184 5.35297 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.211618 3.45398

CAGE analysis