Hb_000009_280

Information

Type -
Description -
Location Contig9: 293947-294540
Sequence    

Annotation

kegg
ID rcu:RCOM_0411630
description Calmodulin, putative (EC:1.3.1.74)
nr
ID XP_002533275.1
description Calmodulin, putative [Ricinus communis]
swissprot
ID Q9SRE6
description Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1
trembl
ID B9T4V6
description Calmodulin, putative OS=Ricinus communis GN=RCOM_0411630 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml41

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_280 0.0 - - Calmodulin, putative [Ricinus communis]
2 Hb_000230_410 0.0508137558 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
3 Hb_007185_050 0.0541166645 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
4 Hb_004650_120 0.061722968 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
5 Hb_001136_040 0.0749584844 - - amino acid transporter, putative [Ricinus communis]
6 Hb_004032_290 0.0750554448 - - protein binding protein, putative [Ricinus communis]
7 Hb_002874_200 0.0808731913 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
8 Hb_000680_060 0.0854802524 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
9 Hb_000676_230 0.0862527453 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
10 Hb_004020_030 0.0887873359 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
11 Hb_009783_010 0.0898748495 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
12 Hb_009070_020 0.0963957065 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
13 Hb_001104_060 0.0966217571 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
14 Hb_000531_030 0.0976940685 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001898_040 0.0999987371 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_006922_120 0.1003166045 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
17 Hb_147006_010 0.102081552 - - receptor like protein 35 [Arabidopsis thaliana]
18 Hb_000077_250 0.1035639772 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
19 Hb_006977_010 0.104637035 - - unnamed protein product [Vitis vinifera]
20 Hb_000866_130 0.1055989353 - - hypothetical protein JCGZ_14397 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_280 Hb_000009_280 Hb_000230_410 Hb_000230_410 Hb_000009_280--Hb_000230_410 Hb_007185_050 Hb_007185_050 Hb_000009_280--Hb_007185_050 Hb_004650_120 Hb_004650_120 Hb_000009_280--Hb_004650_120 Hb_001136_040 Hb_001136_040 Hb_000009_280--Hb_001136_040 Hb_004032_290 Hb_004032_290 Hb_000009_280--Hb_004032_290 Hb_002874_200 Hb_002874_200 Hb_000009_280--Hb_002874_200 Hb_000230_410--Hb_002874_200 Hb_000230_410--Hb_004032_290 Hb_009783_010 Hb_009783_010 Hb_000230_410--Hb_009783_010 Hb_000230_410--Hb_007185_050 Hb_000230_410--Hb_001136_040 Hb_007185_050--Hb_001136_040 Hb_007185_050--Hb_004032_290 Hb_007185_050--Hb_002874_200 Hb_007185_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_007185_050--Hb_001898_040 Hb_001511_220 Hb_001511_220 Hb_004650_120--Hb_001511_220 Hb_000676_230 Hb_000676_230 Hb_004650_120--Hb_000676_230 Hb_004650_120--Hb_004032_290 Hb_001104_060 Hb_001104_060 Hb_004650_120--Hb_001104_060 Hb_004650_120--Hb_007185_050 Hb_001136_160 Hb_001136_160 Hb_001136_040--Hb_001136_160 Hb_001136_040--Hb_009783_010 Hb_001136_040--Hb_001898_040 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020 Hb_004032_290--Hb_002874_200 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_004032_290--Hb_000676_230 Hb_000395_310 Hb_000395_310 Hb_004032_290--Hb_000395_310 Hb_002388_070 Hb_002388_070 Hb_002874_200--Hb_002388_070 Hb_002874_200--Hb_000395_310 Hb_002874_200--Hb_001136_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0441297 1.99984 7.00885 24.6673 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0805548 0 0.330553 11.3617

CAGE analysis