Hb_000009_290

Information

Type -
Description -
Location Contig9: 295839-299617
Sequence    

Annotation

kegg
ID egr:104419779
description cold-regulated 413 plasma membrane protein 4-like
nr
ID XP_012079102.1
description PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
swissprot
ID O23164
description Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana GN=At4g37220 PE=2 SV=2
trembl
ID A0A067K6U0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12278 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61862: 295860-299615 , PASA_asmbl_61863: 297557-298071
cDNA
(Sanger)
(ID:Location)		 010_I17.ab1: 295924-299566

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_290 0.0 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
2 Hb_002301_160 0.0667479665 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
3 Hb_000849_130 0.0720456962 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
4 Hb_000327_380 0.075825443 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
5 Hb_002303_060 0.0780236591 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002045_070 0.0787615437 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
7 Hb_001410_060 0.0898067095 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
8 Hb_000922_040 0.0916161645 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
9 Hb_002995_050 0.0925855851 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
10 Hb_005269_080 0.0946926287 - - protein with unknown function [Ricinus communis]
11 Hb_001489_110 0.0956341413 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
12 Hb_045003_010 0.0957666467 - - Stomatin-1, putative [Ricinus communis]
13 Hb_000377_120 0.097595765 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
14 Hb_000110_120 0.0981423117 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
15 Hb_001353_010 0.0996669166 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
16 Hb_000327_230 0.1015960585 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
17 Hb_002060_010 0.1023255366 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
18 Hb_148209_010 0.1024031822 - - RAS-related GTP-binding family protein [Populus trichocarpa]
19 Hb_006326_040 0.1025214052 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000538_120 0.1027747505 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_290 Hb_000009_290 Hb_002301_160 Hb_002301_160 Hb_000009_290--Hb_002301_160 Hb_000849_130 Hb_000849_130 Hb_000009_290--Hb_000849_130 Hb_000327_380 Hb_000327_380 Hb_000009_290--Hb_000327_380 Hb_002303_060 Hb_002303_060 Hb_000009_290--Hb_002303_060 Hb_002045_070 Hb_002045_070 Hb_000009_290--Hb_002045_070 Hb_001410_060 Hb_001410_060 Hb_000009_290--Hb_001410_060 Hb_002301_160--Hb_002045_070 Hb_000110_120 Hb_000110_120 Hb_002301_160--Hb_000110_120 Hb_004627_030 Hb_004627_030 Hb_002301_160--Hb_004627_030 Hb_002042_150 Hb_002042_150 Hb_002301_160--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_002301_160--Hb_001489_110 Hb_154948_040 Hb_154948_040 Hb_000849_130--Hb_154948_040 Hb_002105_100 Hb_002105_100 Hb_000849_130--Hb_002105_100 Hb_045003_010 Hb_045003_010 Hb_000849_130--Hb_045003_010 Hb_000849_130--Hb_002303_060 Hb_000783_010 Hb_000783_010 Hb_000849_130--Hb_000783_010 Hb_000805_240 Hb_000805_240 Hb_000327_380--Hb_000805_240 Hb_010560_030 Hb_010560_030 Hb_000327_380--Hb_010560_030 Hb_000327_230 Hb_000327_230 Hb_000327_380--Hb_000327_230 Hb_003362_030 Hb_003362_030 Hb_000327_380--Hb_003362_030 Hb_000045_300 Hb_000045_300 Hb_000327_380--Hb_000045_300 Hb_005269_080 Hb_005269_080 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_000220_100 Hb_000220_100 Hb_002045_070--Hb_000220_100 Hb_004108_220 Hb_004108_220 Hb_002045_070--Hb_004108_220 Hb_033594_080 Hb_033594_080 Hb_002045_070--Hb_033594_080 Hb_000749_050 Hb_000749_050 Hb_002045_070--Hb_000749_050 Hb_000377_120 Hb_000377_120 Hb_001410_060--Hb_000377_120 Hb_000563_200 Hb_000563_200 Hb_001410_060--Hb_000563_200 Hb_000922_040 Hb_000922_040 Hb_001410_060--Hb_000922_040 Hb_003880_040 Hb_003880_040 Hb_001410_060--Hb_003880_040 Hb_005306_070 Hb_005306_070 Hb_001410_060--Hb_005306_070 Hb_001410_060--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2637 15.7977 19.5467 44.6551 6.46722 13.7892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3231 51.8556 25.0245 20.5561 15.3399

CAGE analysis