Hb_000009_300

Information

Type -
Description -
Location Contig9: 301590-306709
Sequence    

Annotation

kegg
ID cic:CICLE_v10024731mg
description hypothetical protein
nr
ID XP_006425758.1
description hypothetical protein CICLE_v10024731mg [Citrus clementina]
swissprot
ID O64825
description LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4 PE=1 SV=1
trembl
ID V4RW11
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024731mg PE=4 SV=1
Gene Ontology
ID GO:0004714
description lysm domain receptor-like kinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61864: 301582-301793 , PASA_asmbl_61865: 301839-302299 , PASA_asmbl_61866: 302472-303343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_300 0.0 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]
2 Hb_005649_010 0.1395535259 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
3 Hb_001433_160 0.1408844763 - - phosphatase 2C family protein [Populus trichocarpa]
4 Hb_006615_160 0.1472235943 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
5 Hb_002324_050 0.1475634545 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
6 Hb_001776_100 0.1479152889 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
7 Hb_003025_150 0.1487889023 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003656_170 0.1509952505 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
9 Hb_002078_250 0.1549312127 - - conserved hypothetical protein [Ricinus communis]
10 Hb_168068_010 0.1567691631 - - Disease resistance protein RFL1, putative [Ricinus communis]
11 Hb_002324_040 0.1567708623 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
12 Hb_050236_010 0.1569895354 - - hypothetical protein EUGRSUZ_E02960, partial [Eucalyptus grandis]
13 Hb_028841_010 0.157572398 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
14 Hb_000977_090 0.1584460721 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
15 Hb_001123_170 0.1586756772 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005087_030 0.1589331791 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
17 Hb_000002_360 0.1594367801 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
18 Hb_000009_150 0.1605061394 - - carbohydrate transporter, putative [Ricinus communis]
19 Hb_001377_130 0.1616228012 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
20 Hb_000152_170 0.1625180752 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000009_300 Hb_000009_300 Hb_005649_010 Hb_005649_010 Hb_000009_300--Hb_005649_010 Hb_001433_160 Hb_001433_160 Hb_000009_300--Hb_001433_160 Hb_006615_160 Hb_006615_160 Hb_000009_300--Hb_006615_160 Hb_002324_050 Hb_002324_050 Hb_000009_300--Hb_002324_050 Hb_001776_100 Hb_001776_100 Hb_000009_300--Hb_001776_100 Hb_003025_150 Hb_003025_150 Hb_000009_300--Hb_003025_150 Hb_002343_020 Hb_002343_020 Hb_005649_010--Hb_002343_020 Hb_003964_010 Hb_003964_010 Hb_005649_010--Hb_003964_010 Hb_064985_010 Hb_064985_010 Hb_005649_010--Hb_064985_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_013938_010 Hb_013938_010 Hb_005649_010--Hb_013938_010 Hb_001318_110 Hb_001318_110 Hb_005649_010--Hb_001318_110 Hb_000009_150 Hb_000009_150 Hb_001433_160--Hb_000009_150 Hb_002284_080 Hb_002284_080 Hb_001433_160--Hb_002284_080 Hb_000002_360 Hb_000002_360 Hb_001433_160--Hb_000002_360 Hb_000024_130 Hb_000024_130 Hb_001433_160--Hb_000024_130 Hb_003670_030 Hb_003670_030 Hb_001433_160--Hb_003670_030 Hb_017857_010 Hb_017857_010 Hb_006615_160--Hb_017857_010 Hb_001329_080 Hb_001329_080 Hb_006615_160--Hb_001329_080 Hb_000853_100 Hb_000853_100 Hb_006615_160--Hb_000853_100 Hb_002030_180 Hb_002030_180 Hb_006615_160--Hb_002030_180 Hb_000172_050 Hb_000172_050 Hb_006615_160--Hb_000172_050 Hb_003656_170 Hb_003656_170 Hb_002324_050--Hb_003656_170 Hb_002324_040 Hb_002324_040 Hb_002324_050--Hb_002324_040 Hb_004032_250 Hb_004032_250 Hb_002324_050--Hb_004032_250 Hb_002324_050--Hb_003964_010 Hb_002324_050--Hb_003025_150 Hb_001123_170 Hb_001123_170 Hb_002324_050--Hb_001123_170 Hb_004421_010 Hb_004421_010 Hb_001776_100--Hb_004421_010 Hb_006528_020 Hb_006528_020 Hb_001776_100--Hb_006528_020 Hb_006634_090 Hb_006634_090 Hb_001776_100--Hb_006634_090 Hb_002450_180 Hb_002450_180 Hb_001776_100--Hb_002450_180 Hb_000411_050 Hb_000411_050 Hb_001776_100--Hb_000411_050 Hb_002078_250 Hb_002078_250 Hb_001776_100--Hb_002078_250 Hb_003025_150--Hb_002324_040 Hb_003579_040 Hb_003579_040 Hb_003025_150--Hb_003579_040 Hb_012727_010 Hb_012727_010 Hb_003025_150--Hb_012727_010 Hb_003025_150--Hb_002078_250 Hb_003025_150--Hb_003656_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0050208 5.22676 3.05979 4.56973 0.0100485 0.156287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.341262 0.286464 0.103098 2.74136 0.88188

CAGE analysis