Hb_000009_310

Information

Type -
Description -
Location Contig9: 306960-308819
Sequence    

Annotation

kegg
ID rcu:RCOM_0411680
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002533280.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9S7D9
description Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID B9T4W1
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0411680 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein lyk5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_310 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000975_330 0.1831543573 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
3 Hb_004460_040 0.2064973214 - - -
4 Hb_065500_040 0.2065132024 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000086_610 0.2120521637 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
6 Hb_004787_100 0.2216158781 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
7 Hb_006538_030 0.2221943118 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
8 Hb_002876_070 0.2241362119 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
9 Hb_005276_170 0.2244802534 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
10 Hb_001277_200 0.2250622694 - - cation-transporting atpase plant, putative [Ricinus communis]
11 Hb_000532_030 0.2284714063 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
12 Hb_001472_130 0.233924196 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
13 Hb_004324_290 0.2345650107 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
14 Hb_018563_020 0.2360479998 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
15 Hb_006043_020 0.2385692036 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
16 Hb_000574_120 0.245884608 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002205_010 0.249172288 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
18 Hb_005288_020 0.2494327661 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
19 Hb_156850_080 0.2503008945 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
20 Hb_003207_100 0.2518661283 transcription factor TF Family: TCP PREDICTED: transcription factor TCP9-like [Jatropha curcas]

Gene co-expression network

sample Hb_000009_310 Hb_000009_310 Hb_000975_330 Hb_000975_330 Hb_000009_310--Hb_000975_330 Hb_004460_040 Hb_004460_040 Hb_000009_310--Hb_004460_040 Hb_065500_040 Hb_065500_040 Hb_000009_310--Hb_065500_040 Hb_000086_610 Hb_000086_610 Hb_000009_310--Hb_000086_610 Hb_004787_100 Hb_004787_100 Hb_000009_310--Hb_004787_100 Hb_006538_030 Hb_006538_030 Hb_000009_310--Hb_006538_030 Hb_000975_330--Hb_065500_040 Hb_000072_330 Hb_000072_330 Hb_000975_330--Hb_000072_330 Hb_004324_290 Hb_004324_290 Hb_000975_330--Hb_004324_290 Hb_005048_050 Hb_005048_050 Hb_000975_330--Hb_005048_050 Hb_000574_120 Hb_000574_120 Hb_000975_330--Hb_000574_120 Hb_000752_020 Hb_000752_020 Hb_004460_040--Hb_000752_020 Hb_003207_100 Hb_003207_100 Hb_004460_040--Hb_003207_100 Hb_002876_070 Hb_002876_070 Hb_004460_040--Hb_002876_070 Hb_000283_100 Hb_000283_100 Hb_004460_040--Hb_000283_100 Hb_108802_010 Hb_108802_010 Hb_004460_040--Hb_108802_010 Hb_000086_620 Hb_000086_620 Hb_004460_040--Hb_000086_620 Hb_007218_140 Hb_007218_140 Hb_065500_040--Hb_007218_140 Hb_065500_040--Hb_000072_330 Hb_002301_200 Hb_002301_200 Hb_065500_040--Hb_002301_200 Hb_065500_040--Hb_005048_050 Hb_001846_040 Hb_001846_040 Hb_000086_610--Hb_001846_040 Hb_000086_610--Hb_006538_030 Hb_019654_010 Hb_019654_010 Hb_000086_610--Hb_019654_010 Hb_000322_120 Hb_000322_120 Hb_000086_610--Hb_000322_120 Hb_011287_020 Hb_011287_020 Hb_000086_610--Hb_011287_020 Hb_009683_050 Hb_009683_050 Hb_000086_610--Hb_009683_050 Hb_005568_060 Hb_005568_060 Hb_004787_100--Hb_005568_060 Hb_002217_270 Hb_002217_270 Hb_004787_100--Hb_002217_270 Hb_004787_100--Hb_004324_290 Hb_000532_030 Hb_000532_030 Hb_004787_100--Hb_000532_030 Hb_000103_400 Hb_000103_400 Hb_004787_100--Hb_000103_400 Hb_004787_100--Hb_006538_030 Hb_006538_030--Hb_000532_030 Hb_000345_500 Hb_000345_500 Hb_006538_030--Hb_000345_500 Hb_000836_160 Hb_000836_160 Hb_006538_030--Hb_000836_160 Hb_006043_020 Hb_006043_020 Hb_006538_030--Hb_006043_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0107606 0.794916 0.311413 0.0564871 0.0431083 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0489367 0.0962594 0.0728662 0.0766479 0

CAGE analysis