Hb_000009_320

Information

Type -
Description -
Location Contig9: 310278-312227
Sequence    

Annotation

kegg
ID rcu:RCOM_0411690
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012079104.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
swissprot
ID B3H4P1
description Pentatricopeptide repeat-containing protein At5g66631 OS=Arabidopsis thaliana GN=At5g66631 PE=2 SV=1
trembl
ID A0A067K6H1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61870: 310689-311040 , PASA_asmbl_61873: 312203-312377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_320 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
2 Hb_000049_310 0.0729267575 - - Myosin-J heavy chain, partial [Glycine soja]
3 Hb_003464_060 0.0870420328 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
4 Hb_002903_060 0.0879422886 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
5 Hb_000280_080 0.0904528949 - - hypothetical protein JCGZ_13377 [Jatropha curcas]
6 Hb_004907_110 0.0925057049 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
7 Hb_003058_190 0.0935828309 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
8 Hb_007254_070 0.095709728 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
9 Hb_000061_460 0.0976742845 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
10 Hb_004684_010 0.1019306319 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
11 Hb_000296_070 0.1032914966 - - hypothetical protein B456_003G048700 [Gossypium raimondii]
12 Hb_003057_110 0.1046911953 - - PREDICTED: uncharacterized protein LOC105639179 [Jatropha curcas]
13 Hb_001956_200 0.1049718626 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
14 Hb_000016_250 0.1051321478 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
15 Hb_120327_010 0.1058048677 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
16 Hb_001226_030 0.1062598887 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
17 Hb_000780_230 0.1075900777 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
18 Hb_002110_150 0.1090634452 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
19 Hb_007044_140 0.1096556056 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
20 Hb_001007_060 0.1104645922 - - Transcriptional corepressor SEUSS [Glycine soja]

Gene co-expression network

sample Hb_000009_320 Hb_000009_320 Hb_000049_310 Hb_000049_310 Hb_000009_320--Hb_000049_310 Hb_003464_060 Hb_003464_060 Hb_000009_320--Hb_003464_060 Hb_002903_060 Hb_002903_060 Hb_000009_320--Hb_002903_060 Hb_000280_080 Hb_000280_080 Hb_000009_320--Hb_000280_080 Hb_004907_110 Hb_004907_110 Hb_000009_320--Hb_004907_110 Hb_003058_190 Hb_003058_190 Hb_000009_320--Hb_003058_190 Hb_001956_200 Hb_001956_200 Hb_000049_310--Hb_001956_200 Hb_000049_310--Hb_004907_110 Hb_000049_310--Hb_000280_080 Hb_000061_460 Hb_000061_460 Hb_000049_310--Hb_000061_460 Hb_012325_020 Hb_012325_020 Hb_000049_310--Hb_012325_020 Hb_000768_040 Hb_000768_040 Hb_003464_060--Hb_000768_040 Hb_000030_300 Hb_000030_300 Hb_003464_060--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_003464_060--Hb_002016_110 Hb_004684_010 Hb_004684_010 Hb_003464_060--Hb_004684_010 Hb_003464_060--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_003464_060--Hb_002026_180 Hb_007254_070 Hb_007254_070 Hb_002903_060--Hb_007254_070 Hb_000245_040 Hb_000245_040 Hb_002903_060--Hb_000245_040 Hb_000028_280 Hb_000028_280 Hb_002903_060--Hb_000028_280 Hb_000191_150 Hb_000191_150 Hb_002903_060--Hb_000191_150 Hb_002213_070 Hb_002213_070 Hb_002903_060--Hb_002213_070 Hb_011485_070 Hb_011485_070 Hb_002903_060--Hb_011485_070 Hb_000280_080--Hb_000061_460 Hb_003976_030 Hb_003976_030 Hb_000280_080--Hb_003976_030 Hb_001892_020 Hb_001892_020 Hb_000280_080--Hb_001892_020 Hb_000280_080--Hb_004907_110 Hb_000805_020 Hb_000805_020 Hb_004907_110--Hb_000805_020 Hb_007532_030 Hb_007532_030 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_002631_060 Hb_002631_060 Hb_004907_110--Hb_002631_060 Hb_000016_250 Hb_000016_250 Hb_003058_190--Hb_000016_250 Hb_011671_430 Hb_011671_430 Hb_003058_190--Hb_011671_430 Hb_003058_190--Hb_000030_300 Hb_003058_190--Hb_031527_040 Hb_000096_070 Hb_000096_070 Hb_003058_190--Hb_000096_070 Hb_003058_190--Hb_000061_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.37316 6.53047 3.07694 2.47076 6.96171 6.26451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.31181 5.00427 9.65616 5.08754 3.74117

CAGE analysis