Hb_000009_450

Information

Type -
Description -
Location Contig9: 466322-468295
Sequence    

Annotation

kegg
ID vvi:100853488
description pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
nr
ID XP_012079120.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9SJZ3
description Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1
trembl
ID F6I228
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00190 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_450 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
2 Hb_004375_150 0.1005957687 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
3 Hb_000117_090 0.1009389241 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
4 Hb_000033_020 0.1038798817 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_141990_040 0.1155432656 - - Protein SCAR2, putative [Ricinus communis]
6 Hb_012760_070 0.1161496194 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_008566_050 0.1165753684 - - phosphoglycerate mutase, putative [Ricinus communis]
8 Hb_005686_050 0.1171691035 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
9 Hb_003777_050 0.1173382604 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
10 Hb_000366_090 0.1198292682 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
11 Hb_001856_200 0.1216971841 - - Esterase PIR7B, putative [Ricinus communis]
12 Hb_000110_320 0.1235842337 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
13 Hb_168319_030 0.1272994096 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
14 Hb_000679_090 0.1284581795 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
15 Hb_005545_100 0.1301136614 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
16 Hb_001437_130 0.130167139 - - hypothetical protein F383_15788 [Gossypium arboreum]
17 Hb_012107_060 0.1353350757 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
18 Hb_000039_160 0.1371603202 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
19 Hb_002284_200 0.1375277329 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
20 Hb_000392_310 0.1403793458 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000009_450 Hb_000009_450 Hb_004375_150 Hb_004375_150 Hb_000009_450--Hb_004375_150 Hb_000117_090 Hb_000117_090 Hb_000009_450--Hb_000117_090 Hb_000033_020 Hb_000033_020 Hb_000009_450--Hb_000033_020 Hb_141990_040 Hb_141990_040 Hb_000009_450--Hb_141990_040 Hb_012760_070 Hb_012760_070 Hb_000009_450--Hb_012760_070 Hb_008566_050 Hb_008566_050 Hb_000009_450--Hb_008566_050 Hb_168319_030 Hb_168319_030 Hb_004375_150--Hb_168319_030 Hb_004607_030 Hb_004607_030 Hb_004375_150--Hb_004607_030 Hb_000366_090 Hb_000366_090 Hb_004375_150--Hb_000366_090 Hb_025557_030 Hb_025557_030 Hb_004375_150--Hb_025557_030 Hb_004375_150--Hb_000033_020 Hb_000039_160 Hb_000039_160 Hb_000117_090--Hb_000039_160 Hb_000117_090--Hb_008566_050 Hb_000117_090--Hb_000366_090 Hb_000117_090--Hb_168319_030 Hb_021409_030 Hb_021409_030 Hb_000117_090--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_000117_090--Hb_000563_250 Hb_000033_020--Hb_000366_090 Hb_000307_030 Hb_000307_030 Hb_000033_020--Hb_000307_030 Hb_000033_020--Hb_168319_030 Hb_000033_020--Hb_000117_090 Hb_001825_060 Hb_001825_060 Hb_141990_040--Hb_001825_060 Hb_001856_200 Hb_001856_200 Hb_141990_040--Hb_001856_200 Hb_012573_040 Hb_012573_040 Hb_141990_040--Hb_012573_040 Hb_000304_030 Hb_000304_030 Hb_141990_040--Hb_000304_030 Hb_000549_040 Hb_000549_040 Hb_141990_040--Hb_000549_040 Hb_010812_120 Hb_010812_120 Hb_012760_070--Hb_010812_120 Hb_000016_160 Hb_000016_160 Hb_012760_070--Hb_000016_160 Hb_008772_010 Hb_008772_010 Hb_012760_070--Hb_008772_010 Hb_028515_010 Hb_028515_010 Hb_012760_070--Hb_028515_010 Hb_000748_130 Hb_000748_130 Hb_012760_070--Hb_000748_130 Hb_000175_060 Hb_000175_060 Hb_012760_070--Hb_000175_060 Hb_008566_050--Hb_000039_160 Hb_001437_150 Hb_001437_150 Hb_008566_050--Hb_001437_150 Hb_000155_200 Hb_000155_200 Hb_008566_050--Hb_000155_200 Hb_004705_080 Hb_004705_080 Hb_008566_050--Hb_004705_080 Hb_001123_130 Hb_001123_130 Hb_008566_050--Hb_001123_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.344565 1.16855 0.553667 0.440468 0.31979 0.469202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.595363 1.74767 1.74186 0.422967 0.342559

CAGE analysis