Hb_000009_460

Information

Type -
Description -
Location Contig9: 469205-471318
Sequence    

Annotation

kegg
ID rcu:RCOM_0604070
description hypothetical protein
nr
ID XP_002522387.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID D7LTJ4
description CASP-like protein ARALYDRAFT_485429 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485429 PE=3 SV=2
trembl
ID B9S8R8
description CASP-like protein OS=Ricinus communis GN=RCOM_0604070 PE=3 SV=1
Gene Ontology
ID GO:0016020
description casp-like protein aralydraft_485429

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61900: 471156-471458 , PASA_asmbl_61901: 472013-474155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_460 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000058_060 0.0626037957 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
3 Hb_159809_020 0.0755316256 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000574_480 0.0759424554 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
5 Hb_007416_320 0.0760060547 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003787_010 0.0760139261 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
7 Hb_000307_090 0.0762521788 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
8 Hb_002061_040 0.0762749283 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
9 Hb_009051_030 0.0772309801 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
10 Hb_000496_120 0.0809820966 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
11 Hb_015279_010 0.0819508358 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_011671_100 0.084068211 - - 60S ribosomal protein L15 [Populus trichocarpa]
13 Hb_005736_060 0.0841101761 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
14 Hb_001998_050 0.0850568661 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
15 Hb_000005_080 0.0854634409 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
16 Hb_001048_020 0.0861822715 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
17 Hb_000120_470 0.0878346733 - - hypothetical protein VITISV_017372 [Vitis vinifera]
18 Hb_011173_050 0.0889444018 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
19 Hb_027073_040 0.0891244802 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
20 Hb_000215_060 0.0895124755 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000009_460 Hb_000009_460 Hb_000058_060 Hb_000058_060 Hb_000009_460--Hb_000058_060 Hb_159809_020 Hb_159809_020 Hb_000009_460--Hb_159809_020 Hb_000574_480 Hb_000574_480 Hb_000009_460--Hb_000574_480 Hb_007416_320 Hb_007416_320 Hb_000009_460--Hb_007416_320 Hb_003787_010 Hb_003787_010 Hb_000009_460--Hb_003787_010 Hb_000307_090 Hb_000307_090 Hb_000009_460--Hb_000307_090 Hb_000058_060--Hb_007416_320 Hb_005289_030 Hb_005289_030 Hb_000058_060--Hb_005289_030 Hb_000058_060--Hb_159809_020 Hb_002759_060 Hb_002759_060 Hb_000058_060--Hb_002759_060 Hb_027073_040 Hb_027073_040 Hb_000058_060--Hb_027073_040 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_159809_020--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_003656_070 Hb_003656_070 Hb_000574_480--Hb_003656_070 Hb_001998_050 Hb_001998_050 Hb_000574_480--Hb_001998_050 Hb_000574_480--Hb_002963_010 Hb_008173_090 Hb_008173_090 Hb_000574_480--Hb_008173_090 Hb_012675_060 Hb_012675_060 Hb_000574_480--Hb_012675_060 Hb_000173_220 Hb_000173_220 Hb_000574_480--Hb_000173_220 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_005736_060 Hb_005736_060 Hb_000307_090--Hb_005736_060 Hb_000307_090--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_000307_090--Hb_000926_300 Hb_001235_190 Hb_001235_190 Hb_000307_090--Hb_001235_190 Hb_000307_090--Hb_002963_010 Hb_000307_090--Hb_003599_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.56058 5.8223 3.0406 5.71792 5.71368 8.15775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7768 16.0389 9.44617 6.84447 2.39073

CAGE analysis