Hb_000009_470

Information

Type -
Description -
Location Contig9: 471939-474176
Sequence    

Annotation

kegg
ID rcu:RCOM_0603960
description Oxygen-evolving enhancer protein 1, chloroplast precursor, putative
nr
ID XP_002522386.1
description Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q40459
description Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1
trembl
ID B9S8R7
description Oxygen-evolving enhancer protein 1, chloroplast, putative OS=Ricinus communis GN=RCOM_0603960 PE=4 SV=1
Gene Ontology
ID GO:0009535
description oxygen-evolving enhancer protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61901: 472013-474155
cDNA
(Sanger)
(ID:Location)		 001_L05.ab1: 472704-474056 , 004_O07.ab1: 472837-474155 , 005_K22.ab1: 472771-474071 , 007_B19.ab1: 472703-474073 , 008_M02.ab1: 472755-474073 , 008_O15.ab1: 473078-474096 , 013_F20.ab1: 472812-474155 , 015_K22.ab1: 472932-474155 , 016_D05.ab1: 472936-474085 , 018_O24.ab1: 472865-474073 , 022_M11.ab1: 472871-474075 , 022_M24.ab1: 472872-474155 , 024_I19.ab1: 472841-474085 , 026_F04.ab1: 472903-474082 , 031_G10.ab1: 472830-474081 , 031_M11.ab1: 472800-474085 , 032_K21.ab1: 472945-474116 , 034_O01.ab1: 472826-474089 , 039_B02.ab1: 472920-474068 , 039_G09.ab1: 472754-474082 , 040_A18.ab1: 472752-474050 , 041_F01.ab1: 473056-474107 , 042_A02.ab1: 472809-474078 , 043_O04.ab1: 472829-474078 , 045_L20.ab1: 472720-474068 , 046_K11.ab1: 472757-474082 , 047_K22.ab1: 472773-474078 , 048_C22.ab1: 472772-474116 , 053_H23.ab1: 472751-474077

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_470 0.0 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
2 Hb_011344_030 0.0563377649 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
3 Hb_001517_060 0.0732745675 - - phosphoribulose kinase, putative [Ricinus communis]
4 Hb_004631_020 0.075942123 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_002534_090 0.0771165464 - - geranylgeranyl reductase [Hevea brasiliensis]
6 Hb_007044_020 0.0778097159 - - unnamed protein product [Vitis vinifera]
7 Hb_004712_230 0.0784624603 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
8 Hb_011381_120 0.0809730116 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
9 Hb_000992_090 0.0815986298 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
10 Hb_000221_130 0.0817694858 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
11 Hb_002289_070 0.0825869515 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
12 Hb_000841_040 0.0833543672 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
13 Hb_001135_170 0.084802877 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
14 Hb_023344_040 0.084803802 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001310_020 0.0848776624 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
16 Hb_009093_020 0.085527137 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
17 Hb_000111_460 0.0856178141 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
18 Hb_002333_040 0.0864085129 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
19 Hb_010080_070 0.0886625791 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
20 Hb_001289_050 0.0912016451 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]

Gene co-expression network

sample Hb_000009_470 Hb_000009_470 Hb_011344_030 Hb_011344_030 Hb_000009_470--Hb_011344_030 Hb_001517_060 Hb_001517_060 Hb_000009_470--Hb_001517_060 Hb_004631_020 Hb_004631_020 Hb_000009_470--Hb_004631_020 Hb_002534_090 Hb_002534_090 Hb_000009_470--Hb_002534_090 Hb_007044_020 Hb_007044_020 Hb_000009_470--Hb_007044_020 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230 Hb_023344_040 Hb_023344_040 Hb_011344_030--Hb_023344_040 Hb_000111_460 Hb_000111_460 Hb_011344_030--Hb_000111_460 Hb_001135_170 Hb_001135_170 Hb_011344_030--Hb_001135_170 Hb_011344_030--Hb_007044_020 Hb_000992_090 Hb_000992_090 Hb_011344_030--Hb_000992_090 Hb_009093_020 Hb_009093_020 Hb_001517_060--Hb_009093_020 Hb_002289_070 Hb_002289_070 Hb_001517_060--Hb_002289_070 Hb_001517_060--Hb_002534_090 Hb_001579_050 Hb_001579_050 Hb_001517_060--Hb_001579_050 Hb_000029_390 Hb_000029_390 Hb_001517_060--Hb_000029_390 Hb_004631_020--Hb_004712_230 Hb_000841_040 Hb_000841_040 Hb_004631_020--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_004631_020--Hb_003090_050 Hb_004631_020--Hb_001135_170 Hb_005736_030 Hb_005736_030 Hb_004631_020--Hb_005736_030 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060 Hb_002534_090--Hb_002289_070 Hb_002413_050 Hb_002413_050 Hb_002534_090--Hb_002413_050 Hb_011537_130 Hb_011537_130 Hb_002534_090--Hb_011537_130 Hb_011381_120 Hb_011381_120 Hb_002534_090--Hb_011381_120 Hb_000221_130 Hb_000221_130 Hb_007044_020--Hb_000221_130 Hb_003053_080 Hb_003053_080 Hb_007044_020--Hb_003053_080 Hb_010812_030 Hb_010812_030 Hb_007044_020--Hb_010812_030 Hb_001269_480 Hb_001269_480 Hb_007044_020--Hb_001269_480 Hb_004712_230--Hb_005736_030 Hb_004712_230--Hb_011381_120 Hb_002995_060 Hb_002995_060 Hb_004712_230--Hb_002995_060 Hb_002818_130 Hb_002818_130 Hb_004712_230--Hb_002818_130 Hb_003653_030 Hb_003653_030 Hb_004712_230--Hb_003653_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.95919 48.8554 476.288 238.93 8.89628 7.50604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.60258 1.83003 0.595477 19.8798 1811.53

CAGE analysis