Hb_000009_480

Information

Type -
Description -
Location Contig9: 476402-487249
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12050g
description POPTRDRAFT_764645; hypothetical protein
nr
ID XP_012079126.1
description PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
swissprot
ID Q94A73
description BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2
trembl
ID A0A067KHV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12296 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61904: 476453-478898 , PASA_asmbl_61905: 484342-487252
cDNA
(Sanger)
(ID:Location)		 019_K09.ab1: 476656-478893

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_480 0.0 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
2 Hb_000868_060 0.083402789 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
3 Hb_000270_630 0.0840119689 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
4 Hb_003858_040 0.0870059881 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
5 Hb_080313_010 0.0870564008 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
6 Hb_003747_010 0.0884411267 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
7 Hb_001140_350 0.0890693942 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
8 Hb_000395_020 0.091085365 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
9 Hb_002946_160 0.092817183 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
10 Hb_000523_050 0.0947822051 - - microsomal glutathione s-transferase, putative [Ricinus communis]
11 Hb_000645_120 0.0954657007 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
12 Hb_000236_380 0.0982755673 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
13 Hb_008864_110 0.0983158284 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
14 Hb_003050_370 0.1004968596 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
15 Hb_005503_040 0.1006368449 - - PREDICTED: AMP deaminase [Jatropha curcas]
16 Hb_012023_020 0.1011288777 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
17 Hb_030116_020 0.1014058076 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
18 Hb_002078_020 0.1057712087 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
19 Hb_003605_130 0.1064218446 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
20 Hb_000347_280 0.1074828782 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]

Gene co-expression network

sample Hb_000009_480 Hb_000009_480 Hb_000868_060 Hb_000868_060 Hb_000009_480--Hb_000868_060 Hb_000270_630 Hb_000270_630 Hb_000009_480--Hb_000270_630 Hb_003858_040 Hb_003858_040 Hb_000009_480--Hb_003858_040 Hb_080313_010 Hb_080313_010 Hb_000009_480--Hb_080313_010 Hb_003747_010 Hb_003747_010 Hb_000009_480--Hb_003747_010 Hb_001140_350 Hb_001140_350 Hb_000009_480--Hb_001140_350 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000395_020 Hb_000395_020 Hb_000868_060--Hb_000395_020 Hb_001050_010 Hb_001050_010 Hb_000868_060--Hb_001050_010 Hb_001102_080 Hb_001102_080 Hb_000868_060--Hb_001102_080 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_000523_050 Hb_000523_050 Hb_000270_630--Hb_000523_050 Hb_002946_160 Hb_002946_160 Hb_000270_630--Hb_002946_160 Hb_103012_010 Hb_103012_010 Hb_000270_630--Hb_103012_010 Hb_003813_130 Hb_003813_130 Hb_000270_630--Hb_003813_130 Hb_040262_010 Hb_040262_010 Hb_000270_630--Hb_040262_010 Hb_073973_160 Hb_073973_160 Hb_003858_040--Hb_073973_160 Hb_003858_040--Hb_001050_010 Hb_003858_040--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_003858_040--Hb_000002_490 Hb_001396_280 Hb_001396_280 Hb_003858_040--Hb_001396_280 Hb_012023_020 Hb_012023_020 Hb_080313_010--Hb_012023_020 Hb_080313_010--Hb_001140_350 Hb_005503_040 Hb_005503_040 Hb_080313_010--Hb_005503_040 Hb_063716_080 Hb_063716_080 Hb_080313_010--Hb_063716_080 Hb_080313_010--Hb_003747_010 Hb_001454_320 Hb_001454_320 Hb_080313_010--Hb_001454_320 Hb_030116_020 Hb_030116_020 Hb_003747_010--Hb_030116_020 Hb_002163_010 Hb_002163_010 Hb_003747_010--Hb_002163_010 Hb_001172_010 Hb_001172_010 Hb_003747_010--Hb_001172_010 Hb_004586_180 Hb_004586_180 Hb_003747_010--Hb_004586_180 Hb_006586_050 Hb_006586_050 Hb_003747_010--Hb_006586_050 Hb_001454_280 Hb_001454_280 Hb_001140_350--Hb_001454_280 Hb_000645_120 Hb_000645_120 Hb_001140_350--Hb_000645_120 Hb_000648_100 Hb_000648_100 Hb_001140_350--Hb_000648_100 Hb_000510_310 Hb_000510_310 Hb_001140_350--Hb_000510_310 Hb_003605_130 Hb_003605_130 Hb_001140_350--Hb_003605_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3515 7.20588 6.63428 11.0495 15.2675 14.1092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.92375 4.6595 6.36084 9.32631 2.54571

CAGE analysis