Hb_000009_550

Information

Type -
Description -
Location Contig9: 514620-553122
Sequence    

Annotation

kegg
ID rcu:RCOM_0603640
description hypothetical protein
nr
ID XP_002522375.1
description hypothetical protein RCOM_0603640 [Ricinus communis]
swissprot
ID Q55FG3
description Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1
trembl
ID B9S8Q6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0603640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61914: 514632-529795 , PASA_asmbl_61915: 519205-529795 , PASA_asmbl_61918: 530916-535789 , PASA_asmbl_61920: 543670-544613 , PASA_asmbl_61921: 544650-545027 , PASA_asmbl_61922: 545042-545532 , PASA_asmbl_61923: 545720-546730 , PASA_asmbl_61925: 551418-552969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_550 0.0 - - hypothetical protein RCOM_0603640 [Ricinus communis]
2 Hb_029584_080 0.0702173818 - - serine acetyltransferase [Hevea brasiliensis]
3 Hb_010710_110 0.0743929566 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
4 Hb_000923_020 0.0795827125 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
5 Hb_005307_030 0.0877674303 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
6 Hb_003097_150 0.0899561025 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
7 Hb_015941_030 0.0915622624 - - unknown [Populus trichocarpa]
8 Hb_000284_210 0.0934476018 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000188_100 0.094831808 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
10 Hb_003120_060 0.0954528759 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
11 Hb_000019_230 0.0955558554 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
12 Hb_000787_110 0.0961188399 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
13 Hb_004934_090 0.0976941325 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
14 Hb_001829_010 0.0981750739 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
15 Hb_005237_010 0.0985779695 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
16 Hb_000032_290 0.0986823208 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
17 Hb_002097_090 0.1005285377 - - Splicing factor 3A subunit, putative [Ricinus communis]
18 Hb_002408_010 0.1006082453 - - cation-transporting atpase plant, putative [Ricinus communis]
19 Hb_001488_330 0.1014728253 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
20 Hb_086639_070 0.1024647357 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_550 Hb_000009_550 Hb_029584_080 Hb_029584_080 Hb_000009_550--Hb_029584_080 Hb_010710_110 Hb_010710_110 Hb_000009_550--Hb_010710_110 Hb_000923_020 Hb_000923_020 Hb_000009_550--Hb_000923_020 Hb_005307_030 Hb_005307_030 Hb_000009_550--Hb_005307_030 Hb_003097_150 Hb_003097_150 Hb_000009_550--Hb_003097_150 Hb_015941_030 Hb_015941_030 Hb_000009_550--Hb_015941_030 Hb_029584_080--Hb_015941_030 Hb_000808_040 Hb_000808_040 Hb_029584_080--Hb_000808_040 Hb_002232_170 Hb_002232_170 Hb_029584_080--Hb_002232_170 Hb_000008_330 Hb_000008_330 Hb_029584_080--Hb_000008_330 Hb_086639_070 Hb_086639_070 Hb_029584_080--Hb_086639_070 Hb_010710_110--Hb_005307_030 Hb_000787_110 Hb_000787_110 Hb_010710_110--Hb_000787_110 Hb_004934_090 Hb_004934_090 Hb_010710_110--Hb_004934_090 Hb_010710_110--Hb_000923_020 Hb_001720_050 Hb_001720_050 Hb_010710_110--Hb_001720_050 Hb_003777_330 Hb_003777_330 Hb_000923_020--Hb_003777_330 Hb_000099_240 Hb_000099_240 Hb_000923_020--Hb_000099_240 Hb_004223_090 Hb_004223_090 Hb_000923_020--Hb_004223_090 Hb_002375_020 Hb_002375_020 Hb_000923_020--Hb_002375_020 Hb_001377_290 Hb_001377_290 Hb_000923_020--Hb_001377_290 Hb_000621_080 Hb_000621_080 Hb_000923_020--Hb_000621_080 Hb_002027_260 Hb_002027_260 Hb_005307_030--Hb_002027_260 Hb_001141_330 Hb_001141_330 Hb_005307_030--Hb_001141_330 Hb_000953_010 Hb_000953_010 Hb_005307_030--Hb_000953_010 Hb_004324_280 Hb_004324_280 Hb_005307_030--Hb_004324_280 Hb_000803_190 Hb_000803_190 Hb_005307_030--Hb_000803_190 Hb_000300_060 Hb_000300_060 Hb_003097_150--Hb_000300_060 Hb_004600_040 Hb_004600_040 Hb_003097_150--Hb_004600_040 Hb_005237_010 Hb_005237_010 Hb_003097_150--Hb_005237_010 Hb_002609_110 Hb_002609_110 Hb_003097_150--Hb_002609_110 Hb_002149_020 Hb_002149_020 Hb_003097_150--Hb_002149_020 Hb_001571_040 Hb_001571_040 Hb_003097_150--Hb_001571_040 Hb_015941_030--Hb_000808_040 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2626 9.47913 1.68739 3.84523 15.4361 17.7077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6004 14.048 7.761 4.72107 3.48136

CAGE analysis