Hb_000009_560

Information

Type -
Description -
Location Contig9: 560632-567275
Sequence    

Annotation

kegg
ID rcu:RCOM_0603610
description GTP-binding protein alpha subunit, gna, putative
nr
ID XP_012079134.1
description PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
swissprot
ID O80462
description Extra-large guanine nucleotide-binding protein 1 OS=Arabidopsis thaliana GN=XLG1 PE=1 SV=2
trembl
ID A0A067KHW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12306 PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61928: 565660-566712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_560 0.0 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
2 Hb_000192_080 0.0645844028 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
3 Hb_001377_490 0.0669179171 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
4 Hb_015934_040 0.0670019845 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
5 Hb_001538_130 0.0677520605 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003168_110 0.0683254693 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
7 Hb_000083_120 0.0693575865 - - transcription factor, putative [Ricinus communis]
8 Hb_054865_150 0.0729167557 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
9 Hb_002942_100 0.0731135628 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
10 Hb_001163_100 0.0744675514 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_001198_100 0.0747371108 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
12 Hb_006634_070 0.0751928634 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
13 Hb_012022_090 0.075820517 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
14 Hb_000185_040 0.0759854816 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
15 Hb_000213_010 0.0761404739 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
16 Hb_001341_170 0.076226111 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
17 Hb_000665_060 0.0762552214 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
18 Hb_105105_020 0.0763704066 - - vacuolar protein sorting vps41, putative [Ricinus communis]
19 Hb_000156_010 0.0764472786 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
20 Hb_000406_140 0.0783190477 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000009_560 Hb_000009_560 Hb_000192_080 Hb_000192_080 Hb_000009_560--Hb_000192_080 Hb_001377_490 Hb_001377_490 Hb_000009_560--Hb_001377_490 Hb_015934_040 Hb_015934_040 Hb_000009_560--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000009_560--Hb_001538_130 Hb_003168_110 Hb_003168_110 Hb_000009_560--Hb_003168_110 Hb_000083_120 Hb_000083_120 Hb_000009_560--Hb_000083_120 Hb_007638_030 Hb_007638_030 Hb_000192_080--Hb_007638_030 Hb_012322_010 Hb_012322_010 Hb_000192_080--Hb_012322_010 Hb_000665_060 Hb_000665_060 Hb_000192_080--Hb_000665_060 Hb_000208_280 Hb_000208_280 Hb_000192_080--Hb_000208_280 Hb_004567_090 Hb_004567_090 Hb_000192_080--Hb_004567_090 Hb_000185_040 Hb_000185_040 Hb_001377_490--Hb_000185_040 Hb_000260_010 Hb_000260_010 Hb_001377_490--Hb_000260_010 Hb_000003_590 Hb_000003_590 Hb_001377_490--Hb_000003_590 Hb_164010_030 Hb_164010_030 Hb_001377_490--Hb_164010_030 Hb_000003_250 Hb_000003_250 Hb_001377_490--Hb_000003_250 Hb_010618_010 Hb_010618_010 Hb_015934_040--Hb_010618_010 Hb_000297_010 Hb_000297_010 Hb_015934_040--Hb_000297_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_000032_520 Hb_000032_520 Hb_015934_040--Hb_000032_520 Hb_001248_060 Hb_001248_060 Hb_015934_040--Hb_001248_060 Hb_001538_130--Hb_000032_520 Hb_001198_100 Hb_001198_100 Hb_001538_130--Hb_001198_100 Hb_000395_190 Hb_000395_190 Hb_001538_130--Hb_000395_190 Hb_001538_130--Hb_015934_040 Hb_000035_320 Hb_000035_320 Hb_001538_130--Hb_000035_320 Hb_001329_140 Hb_001329_140 Hb_003168_110--Hb_001329_140 Hb_000684_250 Hb_000684_250 Hb_003168_110--Hb_000684_250 Hb_003494_020 Hb_003494_020 Hb_003168_110--Hb_003494_020 Hb_000590_050 Hb_000590_050 Hb_003168_110--Hb_000590_050 Hb_000890_060 Hb_000890_060 Hb_003168_110--Hb_000890_060 Hb_000923_010 Hb_000923_010 Hb_000083_120--Hb_000923_010 Hb_005765_010 Hb_005765_010 Hb_000083_120--Hb_005765_010 Hb_000111_290 Hb_000111_290 Hb_000083_120--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000083_120--Hb_011016_050 Hb_004324_130 Hb_004324_130 Hb_000083_120--Hb_004324_130 Hb_001500_140 Hb_001500_140 Hb_000083_120--Hb_001500_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3456 15.0899 9.41729 18.5402 13.7175 21.9177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6332 15.2111 22.7713 14.6992 15.1587

CAGE analysis