Hb_000009_580

Information

Type transcription factor
Description TF Family: B3
Location Contig9: 580176-591461
Sequence    

Annotation

kegg
ID rcu:RCOM_0603570
description DNA binding protein, putative
nr
ID XP_012091546.1
description PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
swissprot
ID Q9FGD2
description Putative B3 domain-containing protein At5g66980 OS=Arabidopsis thaliana GN=At5g66980 PE=3 SV=1
trembl
ID B9S8P9
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0603570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61933: 586640-586989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_580 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
2 Hb_003106_040 0.140510698 - - lipase, putative [Ricinus communis]
3 Hb_000665_010 0.147407413 - - hypothetical protein 20 [Hevea brasiliensis]
4 Hb_003517_060 0.148847343 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]
5 Hb_096224_040 0.1491242373 - - PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]
6 Hb_001053_030 0.1542374837 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_000336_140 0.1543411372 - - conserved hypothetical protein [Ricinus communis]
8 Hb_146464_010 0.1563244689 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
9 Hb_027506_020 0.1580024517 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
10 Hb_001220_030 0.1595412045 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
11 Hb_002813_050 0.1600342566 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
12 Hb_042038_020 0.1679225322 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
13 Hb_000291_190 0.1700551509 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
14 Hb_000976_150 0.1701374253 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
15 Hb_005843_150 0.1709711849 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
16 Hb_005843_100 0.1719240008 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
17 Hb_000200_140 0.1728242275 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]
18 Hb_000140_070 0.1730205829 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
19 Hb_012395_220 0.1732803565 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
20 Hb_005306_130 0.1734239097 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000009_580 Hb_000009_580 Hb_003106_040 Hb_003106_040 Hb_000009_580--Hb_003106_040 Hb_000665_010 Hb_000665_010 Hb_000009_580--Hb_000665_010 Hb_003517_060 Hb_003517_060 Hb_000009_580--Hb_003517_060 Hb_096224_040 Hb_096224_040 Hb_000009_580--Hb_096224_040 Hb_001053_030 Hb_001053_030 Hb_000009_580--Hb_001053_030 Hb_000336_140 Hb_000336_140 Hb_000009_580--Hb_000336_140 Hb_000567_210 Hb_000567_210 Hb_003106_040--Hb_000567_210 Hb_002813_050 Hb_002813_050 Hb_003106_040--Hb_002813_050 Hb_001610_110 Hb_001610_110 Hb_003106_040--Hb_001610_110 Hb_002411_030 Hb_002411_030 Hb_003106_040--Hb_002411_030 Hb_027506_020 Hb_027506_020 Hb_003106_040--Hb_027506_020 Hb_000179_070 Hb_000179_070 Hb_003106_040--Hb_000179_070 Hb_005551_060 Hb_005551_060 Hb_000665_010--Hb_005551_060 Hb_000525_010 Hb_000525_010 Hb_000665_010--Hb_000525_010 Hb_001950_030 Hb_001950_030 Hb_000665_010--Hb_001950_030 Hb_000665_010--Hb_096224_040 Hb_000140_070 Hb_000140_070 Hb_000665_010--Hb_000140_070 Hb_004449_050 Hb_004449_050 Hb_003517_060--Hb_004449_050 Hb_000465_480 Hb_000465_480 Hb_003517_060--Hb_000465_480 Hb_003517_060--Hb_000336_140 Hb_018133_030 Hb_018133_030 Hb_003517_060--Hb_018133_030 Hb_003517_060--Hb_001053_030 Hb_003517_060--Hb_000140_070 Hb_005843_100 Hb_005843_100 Hb_096224_040--Hb_005843_100 Hb_096224_040--Hb_027506_020 Hb_005843_150 Hb_005843_150 Hb_096224_040--Hb_005843_150 Hb_001141_390 Hb_001141_390 Hb_096224_040--Hb_001141_390 Hb_096224_040--Hb_002813_050 Hb_124677_060 Hb_124677_060 Hb_001053_030--Hb_124677_060 Hb_000340_110 Hb_000340_110 Hb_001053_030--Hb_000340_110 Hb_002745_010 Hb_002745_010 Hb_001053_030--Hb_002745_010 Hb_001053_030--Hb_000336_140 Hb_000243_380 Hb_000243_380 Hb_001053_030--Hb_000243_380 Hb_144824_010 Hb_144824_010 Hb_001053_030--Hb_144824_010 Hb_000077_070 Hb_000077_070 Hb_000336_140--Hb_000077_070 Hb_000336_140--Hb_000140_070 Hb_045046_010 Hb_045046_010 Hb_000336_140--Hb_045046_010 Hb_003126_030 Hb_003126_030 Hb_000336_140--Hb_003126_030 Hb_003878_140 Hb_003878_140 Hb_000336_140--Hb_003878_140 Hb_002813_010 Hb_002813_010 Hb_000336_140--Hb_002813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.473504 1.11771 0.142551 0.185799 0.715489 0.57308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305233 0.48041 0.673593 0.274534 0

CAGE analysis