Hb_000009_640

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig9: 634186-641742
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11790g
description POPTRDRAFT_563045; DNA binding with one finger 5 family protein
nr
ID KDP31857.1
description hypothetical protein JCGZ_12318 [Jatropha curcas]
swissprot
ID P52408
description Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1
trembl
ID A0A067K6X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12318 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61942: 638790-639746
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_640 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_12318 [Jatropha curcas]
2 Hb_004254_040 0.1210621456 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
3 Hb_004232_010 0.1359999471 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
4 Hb_000172_610 0.1452960661 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
5 Hb_001259_030 0.1496453781 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
6 Hb_002078_430 0.1507775392 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
7 Hb_001140_080 0.1519424813 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
8 Hb_000270_400 0.1566433239 - - lipase, putative [Ricinus communis]
9 Hb_001195_110 0.1568734267 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
10 Hb_000416_100 0.1620535536 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
11 Hb_000282_150 0.1647005694 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
12 Hb_098315_100 0.1695950726 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
13 Hb_000613_020 0.1703590883 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
14 Hb_003687_200 0.1719659989 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
15 Hb_005028_010 0.1726718702 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
16 Hb_012807_120 0.1745248338 - - metal ion binding protein, putative [Ricinus communis]
17 Hb_007545_210 0.174606993 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
18 Hb_000500_290 0.1746327832 - - bromodomain-containing protein, putative [Ricinus communis]
19 Hb_011609_030 0.1746477082 - - conserved hypothetical protein 13 [Hevea brasiliensis]
20 Hb_000365_350 0.1765814028 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_640 Hb_000009_640 Hb_004254_040 Hb_004254_040 Hb_000009_640--Hb_004254_040 Hb_004232_010 Hb_004232_010 Hb_000009_640--Hb_004232_010 Hb_000172_610 Hb_000172_610 Hb_000009_640--Hb_000172_610 Hb_001259_030 Hb_001259_030 Hb_000009_640--Hb_001259_030 Hb_002078_430 Hb_002078_430 Hb_000009_640--Hb_002078_430 Hb_001140_080 Hb_001140_080 Hb_000009_640--Hb_001140_080 Hb_000270_400 Hb_000270_400 Hb_004254_040--Hb_000270_400 Hb_001635_220 Hb_001635_220 Hb_004254_040--Hb_001635_220 Hb_004254_040--Hb_000172_610 Hb_004254_040--Hb_001140_080 Hb_012807_120 Hb_012807_120 Hb_004254_040--Hb_012807_120 Hb_011609_030 Hb_011609_030 Hb_004232_010--Hb_011609_030 Hb_000500_290 Hb_000500_290 Hb_004232_010--Hb_000500_290 Hb_005741_020 Hb_005741_020 Hb_004232_010--Hb_005741_020 Hb_000714_020 Hb_000714_020 Hb_004232_010--Hb_000714_020 Hb_004070_030 Hb_004070_030 Hb_004232_010--Hb_004070_030 Hb_000282_150 Hb_000282_150 Hb_004232_010--Hb_000282_150 Hb_002627_060 Hb_002627_060 Hb_000172_610--Hb_002627_060 Hb_000155_080 Hb_000155_080 Hb_000172_610--Hb_000155_080 Hb_098315_100 Hb_098315_100 Hb_000172_610--Hb_098315_100 Hb_126669_010 Hb_126669_010 Hb_000172_610--Hb_126669_010 Hb_000172_610--Hb_000270_400 Hb_000640_210 Hb_000640_210 Hb_001259_030--Hb_000640_210 Hb_060437_010 Hb_060437_010 Hb_001259_030--Hb_060437_010 Hb_005028_010 Hb_005028_010 Hb_001259_030--Hb_005028_010 Hb_000613_020 Hb_000613_020 Hb_001259_030--Hb_000613_020 Hb_001259_030--Hb_001140_080 Hb_003050_090 Hb_003050_090 Hb_001259_030--Hb_003050_090 Hb_002078_430--Hb_000714_020 Hb_000038_130 Hb_000038_130 Hb_002078_430--Hb_000038_130 Hb_002078_430--Hb_011609_030 Hb_002078_430--Hb_004232_010 Hb_002078_430--Hb_005741_020 Hb_003636_090 Hb_003636_090 Hb_002078_430--Hb_003636_090 Hb_001140_080--Hb_000282_150 Hb_001140_080--Hb_012807_120 Hb_000270_450 Hb_000270_450 Hb_001140_080--Hb_000270_450 Hb_006478_070 Hb_006478_070 Hb_001140_080--Hb_006478_070 Hb_003506_040 Hb_003506_040 Hb_001140_080--Hb_003506_040 Hb_001140_080--Hb_005028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.6701 4.39032 0.934348 1.84516 11.4182 27.5268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3155 2.86439 4.28198 1.82328 0.19095

CAGE analysis