Hb_000010_090

Information

Type -
Description -
Location Contig10: 131796-140237
Sequence    

Annotation

kegg
ID rcu:RCOM_0356490
description Afadin- and alpha-actinin-binding protein, putative
nr
ID XP_012074048.1
description PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
swissprot
ID Q8VC66
description Afadin- and alpha-actinin-binding protein OS=Mus musculus GN=Ssx2ip PE=1 SV=1
trembl
ID A0A067KX11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08663 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00138: 132103-140168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_090 0.0 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
2 Hb_000618_030 0.0717051836 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
3 Hb_000299_040 0.0771417139 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
4 Hb_000053_130 0.0829190207 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
5 Hb_000451_010 0.0829713665 - - secretory carrier membrane protein, putative [Ricinus communis]
6 Hb_073171_040 0.0844185294 - - malic enzyme, putative [Ricinus communis]
7 Hb_003728_080 0.0846691934 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
8 Hb_000230_560 0.0852112848 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
9 Hb_002506_020 0.0859902179 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
10 Hb_001444_010 0.0860959702 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
11 Hb_000618_040 0.086627457 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
12 Hb_011671_240 0.0878174961 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
13 Hb_004182_040 0.0880242487 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
14 Hb_000494_040 0.0880664678 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
15 Hb_003030_070 0.0883366161 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
16 Hb_004369_020 0.0885199487 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
17 Hb_000395_170 0.0893298815 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
18 Hb_008511_130 0.0893545315 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
19 Hb_000606_090 0.0915302937 - - Far upstream element-binding protein, putative [Ricinus communis]
20 Hb_003665_060 0.0923330572 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]

Gene co-expression network

sample Hb_000010_090 Hb_000010_090 Hb_000618_030 Hb_000618_030 Hb_000010_090--Hb_000618_030 Hb_000299_040 Hb_000299_040 Hb_000010_090--Hb_000299_040 Hb_000053_130 Hb_000053_130 Hb_000010_090--Hb_000053_130 Hb_000451_010 Hb_000451_010 Hb_000010_090--Hb_000451_010 Hb_073171_040 Hb_073171_040 Hb_000010_090--Hb_073171_040 Hb_003728_080 Hb_003728_080 Hb_000010_090--Hb_003728_080 Hb_009627_010 Hb_009627_010 Hb_000618_030--Hb_009627_010 Hb_000025_110 Hb_000025_110 Hb_000618_030--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000618_030--Hb_001444_010 Hb_001493_030 Hb_001493_030 Hb_000618_030--Hb_001493_030 Hb_000538_100 Hb_000538_100 Hb_000618_030--Hb_000538_100 Hb_000879_200 Hb_000879_200 Hb_000618_030--Hb_000879_200 Hb_001252_100 Hb_001252_100 Hb_000299_040--Hb_001252_100 Hb_000529_160 Hb_000529_160 Hb_000299_040--Hb_000529_160 Hb_000299_040--Hb_000053_130 Hb_033843_010 Hb_033843_010 Hb_000299_040--Hb_033843_010 Hb_000883_130 Hb_000883_130 Hb_000299_040--Hb_000883_130 Hb_150360_030 Hb_150360_030 Hb_000053_130--Hb_150360_030 Hb_000076_120 Hb_000076_120 Hb_000053_130--Hb_000076_120 Hb_000058_100 Hb_000058_100 Hb_000053_130--Hb_000058_100 Hb_054865_120 Hb_054865_120 Hb_000053_130--Hb_054865_120 Hb_000094_300 Hb_000094_300 Hb_000053_130--Hb_000094_300 Hb_000618_040 Hb_000618_040 Hb_000451_010--Hb_000618_040 Hb_011671_240 Hb_011671_240 Hb_000451_010--Hb_011671_240 Hb_004907_080 Hb_004907_080 Hb_000451_010--Hb_004907_080 Hb_007904_200 Hb_007904_200 Hb_000451_010--Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090 Hb_001141_020 Hb_001141_020 Hb_073171_040--Hb_001141_020 Hb_008511_130 Hb_008511_130 Hb_073171_040--Hb_008511_130 Hb_073171_040--Hb_000618_030 Hb_002997_080 Hb_002997_080 Hb_073171_040--Hb_002997_080 Hb_000679_130 Hb_000679_130 Hb_073171_040--Hb_000679_130 Hb_004369_020 Hb_004369_020 Hb_003728_080--Hb_004369_020 Hb_010139_040 Hb_010139_040 Hb_003728_080--Hb_010139_040 Hb_006064_010 Hb_006064_010 Hb_003728_080--Hb_006064_010 Hb_048937_040 Hb_048937_040 Hb_003728_080--Hb_048937_040 Hb_009646_030 Hb_009646_030 Hb_003728_080--Hb_009646_030 Hb_003665_060 Hb_003665_060 Hb_003728_080--Hb_003665_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8215 4.05074 12.1541 11.044 18.5466 22.6857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7937 10.7379 16.2053 8.16134 8.20309

CAGE analysis