Hb_000010_140

Information

Type -
Description -
Location Contig10: 208061-212051
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09770g
description POPTRDRAFT_575256; hypothetical protein
nr
ID XP_012079953.1
description PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q0WWT7
description Rhodanese-like domain-containing protein 11, chloroplastic OS=Arabidopsis thaliana GN=STR11 PE=2 SV=1
trembl
ID A0A067K7I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11384 PE=4 SV=1
Gene Ontology
ID GO:0005622
description rhodanese-like domain-containing protein chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00145: 210315-212149 , PASA_asmbl_00146: 194946-212067 , PASA_asmbl_00147: 195076-209462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_140 0.0 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000046_330 0.1007388894 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
3 Hb_069662_010 0.1221671887 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
4 Hb_001205_300 0.1222810715 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
5 Hb_006810_030 0.1296642809 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_000608_380 0.1325939361 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012194_050 0.1356796468 - - Aspartyl aminopeptidase, putative [Ricinus communis]
8 Hb_001489_050 0.1376712807 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
9 Hb_000116_190 0.1403617002 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002079_030 0.1407623375 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
11 Hb_041290_010 0.1410579483 - - thioredoxin family protein [Populus trichocarpa]
12 Hb_000347_560 0.1421870931 - - -
13 Hb_032920_050 0.1424262583 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
14 Hb_142328_010 0.1426164449 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
15 Hb_000074_080 0.1430758189 - - unknown [Populus trichocarpa]
16 Hb_001898_210 0.1438546197 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
17 Hb_006570_010 0.1445114704 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000347_040 0.1457206045 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
19 Hb_002871_140 0.1479609752 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
20 Hb_001416_070 0.1479716935 - - oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000010_140 Hb_000010_140 Hb_000046_330 Hb_000046_330 Hb_000010_140--Hb_000046_330 Hb_069662_010 Hb_069662_010 Hb_000010_140--Hb_069662_010 Hb_001205_300 Hb_001205_300 Hb_000010_140--Hb_001205_300 Hb_006810_030 Hb_006810_030 Hb_000010_140--Hb_006810_030 Hb_000608_380 Hb_000608_380 Hb_000010_140--Hb_000608_380 Hb_012194_050 Hb_012194_050 Hb_000010_140--Hb_012194_050 Hb_000046_330--Hb_001205_300 Hb_028960_020 Hb_028960_020 Hb_000046_330--Hb_028960_020 Hb_000212_440 Hb_000212_440 Hb_000046_330--Hb_000212_440 Hb_041290_020 Hb_041290_020 Hb_000046_330--Hb_041290_020 Hb_001040_100 Hb_001040_100 Hb_000046_330--Hb_001040_100 Hb_004531_140 Hb_004531_140 Hb_069662_010--Hb_004531_140 Hb_069662_010--Hb_000608_380 Hb_021346_030 Hb_021346_030 Hb_069662_010--Hb_021346_030 Hb_002184_150 Hb_002184_150 Hb_069662_010--Hb_002184_150 Hb_069662_010--Hb_001205_300 Hb_002079_030 Hb_002079_030 Hb_069662_010--Hb_002079_030 Hb_003462_070 Hb_003462_070 Hb_001205_300--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_000056_130 Hb_000056_130 Hb_006810_030--Hb_000056_130 Hb_001191_110 Hb_001191_110 Hb_006810_030--Hb_001191_110 Hb_001491_030 Hb_001491_030 Hb_006810_030--Hb_001491_030 Hb_000136_140 Hb_000136_140 Hb_006810_030--Hb_000136_140 Hb_000184_070 Hb_000184_070 Hb_006810_030--Hb_000184_070 Hb_000071_150 Hb_000071_150 Hb_006810_030--Hb_000071_150 Hb_006538_120 Hb_006538_120 Hb_000608_380--Hb_006538_120 Hb_000441_060 Hb_000441_060 Hb_000608_380--Hb_000441_060 Hb_005127_030 Hb_005127_030 Hb_000608_380--Hb_005127_030 Hb_000221_140 Hb_000221_140 Hb_000608_380--Hb_000221_140 Hb_000608_380--Hb_001205_300 Hb_152202_010 Hb_152202_010 Hb_012194_050--Hb_152202_010 Hb_001416_070 Hb_001416_070 Hb_012194_050--Hb_001416_070 Hb_005078_010 Hb_005078_010 Hb_012194_050--Hb_005078_010 Hb_003010_020 Hb_003010_020 Hb_012194_050--Hb_003010_020 Hb_000362_150 Hb_000362_150 Hb_012194_050--Hb_000362_150 Hb_032050_040 Hb_032050_040 Hb_012194_050--Hb_032050_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49455 1.99634 7.76281 6.41889 6.57638 12.123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.33627 3.61946 2.37407 5.28522 11.2767

CAGE analysis