Hb_000010_210

Information

Type -
Description -
Location Contig10: 238766-241088
Sequence    

Annotation

kegg
ID cit:102609861
description hypothetical protein
nr
ID XP_012079943.1
description PREDICTED: centromere protein X [Jatropha curcas]
swissprot
ID Q2NKU0
description Centromere protein X OS=Bos taurus GN=STRA13 PE=3 SV=1
trembl
ID A0A067K7I4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11379 PE=4 SV=1
Gene Ontology
ID GO:0006281
description centromere protein x

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00156: 238837-241093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_210 0.0 - - PREDICTED: centromere protein X [Jatropha curcas]
2 Hb_001019_080 0.1088407995 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
3 Hb_007432_080 0.1150103071 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
4 Hb_002289_120 0.1192808216 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
5 Hb_000186_190 0.1222274066 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
6 Hb_086703_010 0.1224141663 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
7 Hb_003878_010 0.1243638067 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
8 Hb_001814_070 0.1287202456 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
9 Hb_070986_010 0.1294232177 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
10 Hb_000442_090 0.1301262401 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
11 Hb_000101_270 0.1320977917 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
12 Hb_116420_030 0.1323711522 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
13 Hb_004297_070 0.134495982 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
14 Hb_000268_010 0.1383997998 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000840_190 0.1384485568 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
16 Hb_000163_160 0.1390265197 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
17 Hb_003126_090 0.1399792144 - - Rop1 [Hevea brasiliensis]
18 Hb_033594_110 0.1399978932 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
19 Hb_000484_020 0.1417974795 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
20 Hb_014783_010 0.1422946391 - - cold-inducible RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000010_210 Hb_000010_210 Hb_001019_080 Hb_001019_080 Hb_000010_210--Hb_001019_080 Hb_007432_080 Hb_007432_080 Hb_000010_210--Hb_007432_080 Hb_002289_120 Hb_002289_120 Hb_000010_210--Hb_002289_120 Hb_000186_190 Hb_000186_190 Hb_000010_210--Hb_000186_190 Hb_086703_010 Hb_086703_010 Hb_000010_210--Hb_086703_010 Hb_003878_010 Hb_003878_010 Hb_000010_210--Hb_003878_010 Hb_001814_070 Hb_001814_070 Hb_001019_080--Hb_001814_070 Hb_001019_080--Hb_002289_120 Hb_000840_190 Hb_000840_190 Hb_001019_080--Hb_000840_190 Hb_001019_080--Hb_007432_080 Hb_007875_030 Hb_007875_030 Hb_001019_080--Hb_007875_030 Hb_000163_160 Hb_000163_160 Hb_007432_080--Hb_000163_160 Hb_010180_020 Hb_010180_020 Hb_007432_080--Hb_010180_020 Hb_001279_310 Hb_001279_310 Hb_007432_080--Hb_001279_310 Hb_001279_070 Hb_001279_070 Hb_007432_080--Hb_001279_070 Hb_004306_020 Hb_004306_020 Hb_007432_080--Hb_004306_020 Hb_168054_010 Hb_168054_010 Hb_007432_080--Hb_168054_010 Hb_002289_120--Hb_001814_070 Hb_000152_420 Hb_000152_420 Hb_002289_120--Hb_000152_420 Hb_001369_640 Hb_001369_640 Hb_002289_120--Hb_001369_640 Hb_128048_010 Hb_128048_010 Hb_002289_120--Hb_128048_010 Hb_019249_010 Hb_019249_010 Hb_002289_120--Hb_019249_010 Hb_002289_120--Hb_003878_010 Hb_003544_020 Hb_003544_020 Hb_000186_190--Hb_003544_020 Hb_000186_190--Hb_002289_120 Hb_000186_190--Hb_003878_010 Hb_005773_060 Hb_005773_060 Hb_000186_190--Hb_005773_060 Hb_002811_260 Hb_002811_260 Hb_000186_190--Hb_002811_260 Hb_001817_090 Hb_001817_090 Hb_000186_190--Hb_001817_090 Hb_000771_100 Hb_000771_100 Hb_086703_010--Hb_000771_100 Hb_003043_070 Hb_003043_070 Hb_086703_010--Hb_003043_070 Hb_000155_180 Hb_000155_180 Hb_086703_010--Hb_000155_180 Hb_001269_320 Hb_001269_320 Hb_086703_010--Hb_001269_320 Hb_003011_040 Hb_003011_040 Hb_086703_010--Hb_003011_040 Hb_003405_060 Hb_003405_060 Hb_086703_010--Hb_003405_060 Hb_003878_010--Hb_128048_010 Hb_003878_010--Hb_007875_030 Hb_003878_010--Hb_001814_070 Hb_001454_400 Hb_001454_400 Hb_003878_010--Hb_001454_400 Hb_002105_090 Hb_002105_090 Hb_003878_010--Hb_002105_090 Hb_004800_230 Hb_004800_230 Hb_003878_010--Hb_004800_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2445 7.77344 11.2101 22.755 13.4975 27.8617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.6655 41.8292 9.25742 8.68096 0.83335

CAGE analysis