Hb_000010_230

Information

Type -
Description -
Location Contig10: 257872-258957
Sequence    

Annotation

kegg
ID rcu:RCOM_1507870
description F-box and wd40 domain protein, putative
nr
ID XP_012080518.1
description PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
swissprot
ID Q09990
description F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2
trembl
ID A0A067K450
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11377 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_230 0.0 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
2 Hb_002874_250 0.0017633473 - - -
3 Hb_003882_030 0.0065405758 - - putative retrotransposon protein [Phyllostachys edulis]
4 Hb_004453_120 0.0246206123 - - ammonium transporter, putative [Ricinus communis]
5 Hb_157680_010 0.0274883598 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
6 Hb_158575_010 0.028086812 - - conserved hypothetical protein [Ricinus communis]
7 Hb_184398_010 0.0498624125 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_176140_010 0.052479048 - - polyprotein [Oryza australiensis]
9 Hb_001779_050 0.0533976436 - - polyprotein [Ananas comosus]
10 Hb_001681_010 0.0536353999 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
11 Hb_001338_010 0.0658476449 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
12 Hb_000031_070 0.0705630752 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
13 Hb_004466_080 0.0725804119 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
14 Hb_001081_070 0.085804586 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_025654_010 0.0864157929 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
16 Hb_011540_050 0.0879229532 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_187301_010 0.0882162782 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
18 Hb_000088_280 0.0916646434 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
19 Hb_003370_040 0.0960043378 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
20 Hb_001192_020 0.0976963918 - - -

Gene co-expression network

sample Hb_000010_230 Hb_000010_230 Hb_002874_250 Hb_002874_250 Hb_000010_230--Hb_002874_250 Hb_003882_030 Hb_003882_030 Hb_000010_230--Hb_003882_030 Hb_004453_120 Hb_004453_120 Hb_000010_230--Hb_004453_120 Hb_157680_010 Hb_157680_010 Hb_000010_230--Hb_157680_010 Hb_158575_010 Hb_158575_010 Hb_000010_230--Hb_158575_010 Hb_184398_010 Hb_184398_010 Hb_000010_230--Hb_184398_010 Hb_002874_250--Hb_003882_030 Hb_002874_250--Hb_004453_120 Hb_002874_250--Hb_157680_010 Hb_002874_250--Hb_158575_010 Hb_176140_010 Hb_176140_010 Hb_002874_250--Hb_176140_010 Hb_003882_030--Hb_004453_120 Hb_003882_030--Hb_157680_010 Hb_003882_030--Hb_158575_010 Hb_003882_030--Hb_176140_010 Hb_004453_120--Hb_157680_010 Hb_004453_120--Hb_158575_010 Hb_004453_120--Hb_176140_010 Hb_157680_010--Hb_158575_010 Hb_157680_010--Hb_176140_010 Hb_001779_050 Hb_001779_050 Hb_157680_010--Hb_001779_050 Hb_158575_010--Hb_176140_010 Hb_158575_010--Hb_001779_050 Hb_001681_010 Hb_001681_010 Hb_184398_010--Hb_001681_010 Hb_004466_080 Hb_004466_080 Hb_184398_010--Hb_004466_080 Hb_025654_010 Hb_025654_010 Hb_184398_010--Hb_025654_010 Hb_011540_050 Hb_011540_050 Hb_184398_010--Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_184398_010--Hb_187301_010 Hb_000088_280 Hb_000088_280 Hb_184398_010--Hb_000088_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0155081 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.148134

CAGE analysis