Hb_000010_260

Information

Type -
Description -
Location Contig10: 277782-281410
Sequence    

Annotation

kegg
ID rcu:RCOM_1507830
description hypothetical protein
nr
ID XP_012079938.1
description PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RAQ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1507830 PE=4 SV=1
Gene Ontology
ID GO:0005747
description PREDICTED: uncharacterized protein LOC105640273

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00159: 277952-284601 , PASA_asmbl_00160: 278264-278638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_260 0.0 - - PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]
2 Hb_000083_090 0.1136431761 - - immunophilin, putative [Ricinus communis]
3 Hb_003683_080 0.118336538 - - Angio-associated migratory cell protein, putative [Ricinus communis]
4 Hb_001136_060 0.1196671456 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
5 Hb_026048_070 0.1279959289 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
6 Hb_000483_250 0.1295080871 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
7 Hb_002609_210 0.1305963066 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
8 Hb_009421_040 0.1315597017 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
9 Hb_005211_190 0.1315712707 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
10 Hb_000069_140 0.1334163947 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
11 Hb_002107_120 0.1370381196 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
12 Hb_001424_020 0.1376823199 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
13 Hb_002391_220 0.1378901152 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
14 Hb_002613_020 0.1394942495 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
15 Hb_001387_020 0.1399439479 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
16 Hb_003349_080 0.1418833796 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
17 Hb_033153_060 0.1422537334 - - Transcription elongation factor, putative [Ricinus communis]
18 Hb_001304_140 0.1437748315 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
19 Hb_000389_080 0.1464554419 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
20 Hb_002687_170 0.1472711463 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000010_260 Hb_000010_260 Hb_000083_090 Hb_000083_090 Hb_000010_260--Hb_000083_090 Hb_003683_080 Hb_003683_080 Hb_000010_260--Hb_003683_080 Hb_001136_060 Hb_001136_060 Hb_000010_260--Hb_001136_060 Hb_026048_070 Hb_026048_070 Hb_000010_260--Hb_026048_070 Hb_000483_250 Hb_000483_250 Hb_000010_260--Hb_000483_250 Hb_002609_210 Hb_002609_210 Hb_000010_260--Hb_002609_210 Hb_000163_210 Hb_000163_210 Hb_000083_090--Hb_000163_210 Hb_000260_200 Hb_000260_200 Hb_000083_090--Hb_000260_200 Hb_001424_020 Hb_001424_020 Hb_000083_090--Hb_001424_020 Hb_000389_080 Hb_000389_080 Hb_000083_090--Hb_000389_080 Hb_000193_120 Hb_000193_120 Hb_000083_090--Hb_000193_120 Hb_004156_040 Hb_004156_040 Hb_000083_090--Hb_004156_040 Hb_008318_010 Hb_008318_010 Hb_003683_080--Hb_008318_010 Hb_001387_020 Hb_001387_020 Hb_003683_080--Hb_001387_020 Hb_000080_210 Hb_000080_210 Hb_003683_080--Hb_000080_210 Hb_003683_080--Hb_000483_250 Hb_003683_080--Hb_026048_070 Hb_000042_200 Hb_000042_200 Hb_001136_060--Hb_000042_200 Hb_000834_030 Hb_000834_030 Hb_001136_060--Hb_000834_030 Hb_000445_490 Hb_000445_490 Hb_001136_060--Hb_000445_490 Hb_000705_290 Hb_000705_290 Hb_001136_060--Hb_000705_290 Hb_033153_060 Hb_033153_060 Hb_001136_060--Hb_033153_060 Hb_003349_080 Hb_003349_080 Hb_001136_060--Hb_003349_080 Hb_011644_030 Hb_011644_030 Hb_026048_070--Hb_011644_030 Hb_003623_050 Hb_003623_050 Hb_026048_070--Hb_003623_050 Hb_001016_090 Hb_001016_090 Hb_026048_070--Hb_001016_090 Hb_003053_030 Hb_003053_030 Hb_026048_070--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_026048_070--Hb_148200_010 Hb_001279_360 Hb_001279_360 Hb_026048_070--Hb_001279_360 Hb_005211_190 Hb_005211_190 Hb_000483_250--Hb_005211_190 Hb_002107_120 Hb_002107_120 Hb_000483_250--Hb_002107_120 Hb_060618_010 Hb_060618_010 Hb_000483_250--Hb_060618_010 Hb_000836_140 Hb_000836_140 Hb_000483_250--Hb_000836_140 Hb_000483_250--Hb_001424_020 Hb_000483_250--Hb_000083_090 Hb_009711_020 Hb_009711_020 Hb_002609_210--Hb_009711_020 Hb_002609_210--Hb_005211_190 Hb_000030_290 Hb_000030_290 Hb_002609_210--Hb_000030_290 Hb_009421_040 Hb_009421_040 Hb_002609_210--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_002609_210--Hb_000680_140 Hb_000334_210 Hb_000334_210 Hb_002609_210--Hb_000334_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.49324 1.60318 6.03471 4.64542 4.74387 8.09492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.9247 30.3108 11.2724 13.6934 12.7537

CAGE analysis