Hb_000010_350

Information

Type -
Description -
Location Contig10: 386016-392046
Sequence    

Annotation

kegg
ID cic:CICLE_v10019069mg
description hypothetical protein
nr
ID XP_012079926.1
description PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
swissprot
ID Q98TX3
description Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1
trembl
ID A0A067KFE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11366 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00176: 385976-392064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_350 0.0 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
2 Hb_000062_080 0.1067472084 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
3 Hb_001865_060 0.113577637 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
4 Hb_000866_370 0.1144485703 - - synaptotagmin, putative [Ricinus communis]
5 Hb_004108_170 0.1170690908 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000448_060 0.1318498749 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
7 Hb_089100_040 0.1343958393 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
8 Hb_003494_060 0.1378711253 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
9 Hb_000976_290 0.1384847108 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
10 Hb_001141_360 0.1389564535 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
11 Hb_000997_110 0.1393340754 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
12 Hb_002233_020 0.1402682344 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
13 Hb_002686_400 0.1450302499 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
14 Hb_000805_230 0.1476857172 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
15 Hb_003060_090 0.1493132208 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
16 Hb_004976_040 0.1494642517 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
17 Hb_004032_310 0.1500919506 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
18 Hb_000645_240 0.1513399599 - - AMP dependent ligase, putative [Ricinus communis]
19 Hb_001288_070 0.1516652509 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
20 Hb_000732_080 0.1518464579 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]

Gene co-expression network

sample Hb_000010_350 Hb_000010_350 Hb_000062_080 Hb_000062_080 Hb_000010_350--Hb_000062_080 Hb_001865_060 Hb_001865_060 Hb_000010_350--Hb_001865_060 Hb_000866_370 Hb_000866_370 Hb_000010_350--Hb_000866_370 Hb_004108_170 Hb_004108_170 Hb_000010_350--Hb_004108_170 Hb_000448_060 Hb_000448_060 Hb_000010_350--Hb_000448_060 Hb_089100_040 Hb_089100_040 Hb_000010_350--Hb_089100_040 Hb_000062_080--Hb_001865_060 Hb_127599_010 Hb_127599_010 Hb_000062_080--Hb_127599_010 Hb_000062_080--Hb_000448_060 Hb_000802_190 Hb_000802_190 Hb_000062_080--Hb_000802_190 Hb_001141_360 Hb_001141_360 Hb_000062_080--Hb_001141_360 Hb_001865_060--Hb_001141_360 Hb_012725_040 Hb_012725_040 Hb_001865_060--Hb_012725_040 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_003494_060 Hb_003494_060 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310 Hb_117895_010 Hb_117895_010 Hb_000866_370--Hb_117895_010 Hb_000866_370--Hb_089100_040 Hb_002233_020 Hb_002233_020 Hb_000866_370--Hb_002233_020 Hb_011310_200 Hb_011310_200 Hb_000866_370--Hb_011310_200 Hb_000645_240 Hb_000645_240 Hb_000866_370--Hb_000645_240 Hb_003060_090 Hb_003060_090 Hb_004108_170--Hb_003060_090 Hb_004108_170--Hb_000062_080 Hb_004108_170--Hb_127599_010 Hb_011861_080 Hb_011861_080 Hb_004108_170--Hb_011861_080 Hb_000363_370 Hb_000363_370 Hb_004108_170--Hb_000363_370 Hb_000448_060--Hb_004032_310 Hb_002915_070 Hb_002915_070 Hb_000448_060--Hb_002915_070 Hb_002154_020 Hb_002154_020 Hb_000448_060--Hb_002154_020 Hb_000448_060--Hb_001865_060 Hb_000805_230 Hb_000805_230 Hb_000448_060--Hb_000805_230 Hb_000189_470 Hb_000189_470 Hb_089100_040--Hb_000189_470 Hb_000362_090 Hb_000362_090 Hb_089100_040--Hb_000362_090 Hb_009897_010 Hb_009897_010 Hb_089100_040--Hb_009897_010 Hb_000216_020 Hb_000216_020 Hb_089100_040--Hb_000216_020 Hb_065500_030 Hb_065500_030 Hb_089100_040--Hb_065500_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.9642 252.891 29.0688 39.3588 37.1249 31.9161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.5972 13.6168 20.4473 75.1087 31.8856

CAGE analysis