Hb_000010_400

Information

Type transcription factor
Description TF Family: C3H
Location Contig10: 433846-438683
Sequence    

Annotation

kegg
ID rcu:RCOM_1507490
description nucleic acid binding protein, putative
nr
ID XP_012079920.1
description PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
swissprot
ID Q9STM4
description Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=2 SV=1
trembl
ID A0A067KGL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11360 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 67

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00187: 434193-438657 , PASA_asmbl_00188: 436291-436884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_400 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
2 Hb_011995_010 0.0508385529 - - dc50, putative [Ricinus communis]
3 Hb_007813_040 0.0566536031 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
4 Hb_001926_030 0.0578643705 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
5 Hb_000302_270 0.0651542793 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
6 Hb_077562_050 0.0671214235 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
7 Hb_000521_320 0.0677063263 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
8 Hb_000538_270 0.0697220548 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
9 Hb_001595_030 0.0708028455 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
10 Hb_002499_040 0.07122321 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
11 Hb_000016_250 0.0725880264 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
12 Hb_002530_030 0.0728716972 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
13 Hb_000289_060 0.0731931562 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
14 Hb_002835_370 0.0752403337 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
15 Hb_001305_010 0.0755466635 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
16 Hb_000917_060 0.0774996845 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
17 Hb_036790_100 0.0776706803 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
18 Hb_000185_070 0.0782337672 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000879_200 0.0785346432 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
20 Hb_000757_060 0.0788175189 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]

Gene co-expression network

sample Hb_000010_400 Hb_000010_400 Hb_011995_010 Hb_011995_010 Hb_000010_400--Hb_011995_010 Hb_007813_040 Hb_007813_040 Hb_000010_400--Hb_007813_040 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_000302_270 Hb_000302_270 Hb_000010_400--Hb_000302_270 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_000521_320 Hb_000521_320 Hb_000010_400--Hb_000521_320 Hb_001248_060 Hb_001248_060 Hb_011995_010--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_011995_010--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_011995_010--Hb_001409_020 Hb_000883_020 Hb_000883_020 Hb_011995_010--Hb_000883_020 Hb_000563_320 Hb_000563_320 Hb_011995_010--Hb_000563_320 Hb_003862_050 Hb_003862_050 Hb_007813_040--Hb_003862_050 Hb_002620_010 Hb_002620_010 Hb_007813_040--Hb_002620_010 Hb_000175_460 Hb_000175_460 Hb_007813_040--Hb_000175_460 Hb_000318_190 Hb_000318_190 Hb_007813_040--Hb_000318_190 Hb_000629_010 Hb_000629_010 Hb_007813_040--Hb_000629_010 Hb_004055_150 Hb_004055_150 Hb_001926_030--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_001926_030--Hb_000879_200 Hb_002686_250 Hb_002686_250 Hb_001926_030--Hb_002686_250 Hb_006620_020 Hb_006620_020 Hb_001926_030--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_001926_030--Hb_000853_230 Hb_000302_270--Hb_000521_320 Hb_000185_070 Hb_000185_070 Hb_000302_270--Hb_000185_070 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_004678_040 Hb_004678_040 Hb_000302_270--Hb_004678_040 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060 Hb_000289_060 Hb_000289_060 Hb_077562_050--Hb_000289_060 Hb_000538_270 Hb_000538_270 Hb_077562_050--Hb_000538_270 Hb_000453_170 Hb_000453_170 Hb_077562_050--Hb_000453_170 Hb_027295_050 Hb_027295_050 Hb_077562_050--Hb_027295_050 Hb_004155_010 Hb_004155_010 Hb_077562_050--Hb_004155_010 Hb_000521_320--Hb_004678_040 Hb_002950_100 Hb_002950_100 Hb_000521_320--Hb_002950_100 Hb_000521_320--Hb_011995_010 Hb_025645_010 Hb_025645_010 Hb_000521_320--Hb_025645_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.5058 22.8099 25.5638 14.334 26.7533 26.9323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.897 26.3835 32.7712 18.2563 14.4751

CAGE analysis