Hb_000010_410

Information

Type -
Description -
Location Contig10: 439524-441534
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10070g
description POPTRDRAFT_1101558; hypothetical protein
nr
ID XP_002322218.2
description hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
swissprot
ID Q8GYN5
description RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1
trembl
ID B9IF41
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s10070g PE=4 SV=2
Gene Ontology
ID GO:0005634
description rpm1-interacting protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00189: 439856-441563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_410 0.0 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
2 Hb_001053_150 0.1554631158 - - -
3 Hb_002239_060 0.1567162231 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
4 Hb_005060_020 0.163394882 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
5 Hb_005224_010 0.1694802589 - - glycine-rich protein [Bruguiera gymnorhiza]
6 Hb_005489_100 0.1708517187 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001222_050 0.1768612492 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
8 Hb_001894_170 0.1770258334 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
9 Hb_002756_020 0.1809222406 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
10 Hb_000161_150 0.1834376644 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
11 Hb_000723_190 0.1844139546 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
12 Hb_005614_050 0.1847132936 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
13 Hb_017434_050 0.1862575886 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
14 Hb_003333_050 0.1863913713 - - hypothetical protein JCGZ_20906 [Jatropha curcas]
15 Hb_005671_020 0.1880759631 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
16 Hb_003117_010 0.189897253 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
17 Hb_003913_080 0.1921560684 - - rpl27A [Hemiselmis andersenii]
18 Hb_000373_180 0.1955185779 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
19 Hb_000130_110 0.1981490803 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
20 Hb_001159_080 0.1987102468 - - hypothetical protein JCGZ_20745 [Jatropha curcas]

Gene co-expression network

sample Hb_000010_410 Hb_000010_410 Hb_001053_150 Hb_001053_150 Hb_000010_410--Hb_001053_150 Hb_002239_060 Hb_002239_060 Hb_000010_410--Hb_002239_060 Hb_005060_020 Hb_005060_020 Hb_000010_410--Hb_005060_020 Hb_005224_010 Hb_005224_010 Hb_000010_410--Hb_005224_010 Hb_005489_100 Hb_005489_100 Hb_000010_410--Hb_005489_100 Hb_001222_050 Hb_001222_050 Hb_000010_410--Hb_001222_050 Hb_002078_480 Hb_002078_480 Hb_001053_150--Hb_002078_480 Hb_001035_070 Hb_001035_070 Hb_001053_150--Hb_001035_070 Hb_004429_070 Hb_004429_070 Hb_001053_150--Hb_004429_070 Hb_000963_140 Hb_000963_140 Hb_001053_150--Hb_000963_140 Hb_006472_050 Hb_006472_050 Hb_001053_150--Hb_006472_050 Hb_001481_140 Hb_001481_140 Hb_002239_060--Hb_001481_140 Hb_002742_090 Hb_002742_090 Hb_002239_060--Hb_002742_090 Hb_093458_050 Hb_093458_050 Hb_002239_060--Hb_093458_050 Hb_003581_260 Hb_003581_260 Hb_002239_060--Hb_003581_260 Hb_001008_090 Hb_001008_090 Hb_002239_060--Hb_001008_090 Hb_000530_070 Hb_000530_070 Hb_002239_060--Hb_000530_070 Hb_029510_040 Hb_029510_040 Hb_005060_020--Hb_029510_040 Hb_009005_050 Hb_009005_050 Hb_005060_020--Hb_009005_050 Hb_001189_050 Hb_001189_050 Hb_005060_020--Hb_001189_050 Hb_005060_020--Hb_001053_150 Hb_012799_100 Hb_012799_100 Hb_005060_020--Hb_012799_100 Hb_000327_220 Hb_000327_220 Hb_005224_010--Hb_000327_220 Hb_005224_010--Hb_002239_060 Hb_001159_080 Hb_001159_080 Hb_005224_010--Hb_001159_080 Hb_005224_010--Hb_005489_100 Hb_003972_080 Hb_003972_080 Hb_005224_010--Hb_003972_080 Hb_009314_010 Hb_009314_010 Hb_005224_010--Hb_009314_010 Hb_003994_190 Hb_003994_190 Hb_005489_100--Hb_003994_190 Hb_005489_100--Hb_000327_220 Hb_005489_100--Hb_001159_080 Hb_005489_100--Hb_002239_060 Hb_000130_110 Hb_000130_110 Hb_005489_100--Hb_000130_110 Hb_001222_050--Hb_005224_010 Hb_011316_020 Hb_011316_020 Hb_001222_050--Hb_011316_020 Hb_000922_390 Hb_000922_390 Hb_001222_050--Hb_000922_390 Hb_003333_050 Hb_003333_050 Hb_001222_050--Hb_003333_050 Hb_000599_350 Hb_000599_350 Hb_001222_050--Hb_000599_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.824883 0.131459 0.23321 1.8202 0.797307 1.02899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62781 5.25308 8.7304 2.82764 0.530016

CAGE analysis