Hb_000010_430

Information

Type -
Description -
Location Contig10: 479915-483599
Sequence    

Annotation

kegg
ID rcu:RCOM_1507450
description Esterase precursor, putative
nr
ID XP_002511260.1
description Esterase precursor, putative [Ricinus communis]
swissprot
ID Q9STM6
description GDSL esterase/lipase At3g48460 OS=Arabidopsis thaliana GN=At3g48460 PE=2 SV=1
trembl
ID B9RAN5
description Esterase, putative OS=Ricinus communis GN=RCOM_1507450 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at3g48460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00196: 482205-483654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_430 0.0 - - Esterase precursor, putative [Ricinus communis]
2 Hb_000375_100 0.0197133971 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
3 Hb_007760_060 0.0509939225 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
4 Hb_072952_010 0.0535833221 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
5 Hb_007576_090 0.059171664 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
6 Hb_061336_010 0.0601535151 - - conserved hypothetical protein [Ricinus communis]
7 Hb_028486_020 0.0632674767 - - conserved hypothetical protein [Ricinus communis]
8 Hb_180535_010 0.0716876224 - - -
9 Hb_000816_180 0.0751867539 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
10 Hb_000130_400 0.0765634866 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
11 Hb_000127_240 0.0860479845 - - SAUR39 [Populus tomentosa]
12 Hb_000258_400 0.0932340936 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
13 Hb_006614_020 0.0981408381 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
14 Hb_000397_060 0.0997130441 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
15 Hb_007218_050 0.1005448376 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000073_040 0.1029892536 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
17 Hb_002030_010 0.1062399269 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
18 Hb_001257_070 0.1073498485 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
19 Hb_059832_010 0.1076881748 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
20 Hb_000496_100 0.1078079632 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000010_430 Hb_000010_430 Hb_000375_100 Hb_000375_100 Hb_000010_430--Hb_000375_100 Hb_007760_060 Hb_007760_060 Hb_000010_430--Hb_007760_060 Hb_072952_010 Hb_072952_010 Hb_000010_430--Hb_072952_010 Hb_007576_090 Hb_007576_090 Hb_000010_430--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_000010_430--Hb_061336_010 Hb_028486_020 Hb_028486_020 Hb_000010_430--Hb_028486_020 Hb_000375_100--Hb_007760_060 Hb_000375_100--Hb_072952_010 Hb_000375_100--Hb_007576_090 Hb_000375_100--Hb_061336_010 Hb_000375_100--Hb_028486_020 Hb_000127_240 Hb_000127_240 Hb_007760_060--Hb_000127_240 Hb_007760_060--Hb_007576_090 Hb_180535_010 Hb_180535_010 Hb_007760_060--Hb_180535_010 Hb_007760_060--Hb_072952_010 Hb_072952_010--Hb_061336_010 Hb_072952_010--Hb_007576_090 Hb_072952_010--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_072952_010--Hb_000816_180 Hb_000258_400 Hb_000258_400 Hb_072952_010--Hb_000258_400 Hb_007576_090--Hb_180535_010 Hb_007576_090--Hb_000816_180 Hb_007576_090--Hb_061336_010 Hb_007218_050 Hb_007218_050 Hb_007576_090--Hb_007218_050 Hb_061336_010--Hb_000816_180 Hb_061336_010--Hb_180535_010 Hb_061336_010--Hb_028486_020 Hb_061336_010--Hb_007218_050 Hb_028486_020--Hb_000816_180 Hb_000496_100 Hb_000496_100 Hb_028486_020--Hb_000496_100 Hb_028486_020--Hb_072952_010 Hb_028486_020--Hb_007576_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0160958 59.4277 28.0372 0.0171743 0.00843087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0402677 0 0 0.00629701 9.30086

CAGE analysis