Hb_000010_460

Information

Type -
Description -
Location Contig10: 495246-498735
Sequence    

Annotation

kegg
ID obr:102721704
description uncharacterized LOC102721704
nr
ID KCW83208.1
description hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CXK5
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B001502 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00198: 495246-518517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_460 0.0 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
2 Hb_002061_040 0.0771867293 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
3 Hb_010080_090 0.079761039 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
4 Hb_172426_040 0.0826946882 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
5 Hb_000020_060 0.0831021125 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
6 Hb_001832_010 0.0837277528 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
7 Hb_000028_590 0.0841255101 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
8 Hb_000671_090 0.0841583348 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
9 Hb_001833_110 0.0863047356 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000679_010 0.0901079357 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
11 Hb_000010_470 0.0905090274 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
12 Hb_001722_100 0.0907989662 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000834_270 0.0914959109 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
14 Hb_012053_070 0.0918727447 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
15 Hb_002374_100 0.0928647474 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
16 Hb_000025_120 0.0935942721 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
17 Hb_065525_020 0.0937894669 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
18 Hb_155764_010 0.0937917749 - - -
19 Hb_004724_340 0.0944476614 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
20 Hb_159809_020 0.0948163525 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000010_460 Hb_000010_460 Hb_002061_040 Hb_002061_040 Hb_000010_460--Hb_002061_040 Hb_010080_090 Hb_010080_090 Hb_000010_460--Hb_010080_090 Hb_172426_040 Hb_172426_040 Hb_000010_460--Hb_172426_040 Hb_000020_060 Hb_000020_060 Hb_000010_460--Hb_000020_060 Hb_001832_010 Hb_001832_010 Hb_000010_460--Hb_001832_010 Hb_000028_590 Hb_000028_590 Hb_000010_460--Hb_000028_590 Hb_001653_020 Hb_001653_020 Hb_002061_040--Hb_001653_020 Hb_012053_070 Hb_012053_070 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_001519_050 Hb_001519_050 Hb_002061_040--Hb_001519_050 Hb_000009_460 Hb_000009_460 Hb_002061_040--Hb_000009_460 Hb_002061_040--Hb_172426_040 Hb_012675_060 Hb_012675_060 Hb_010080_090--Hb_012675_060 Hb_000834_270 Hb_000834_270 Hb_010080_090--Hb_000834_270 Hb_004724_340 Hb_004724_340 Hb_010080_090--Hb_004724_340 Hb_002963_010 Hb_002963_010 Hb_010080_090--Hb_002963_010 Hb_004586_320 Hb_004586_320 Hb_010080_090--Hb_004586_320 Hb_001360_050 Hb_001360_050 Hb_010080_090--Hb_001360_050 Hb_003918_010 Hb_003918_010 Hb_172426_040--Hb_003918_010 Hb_003787_010 Hb_003787_010 Hb_172426_040--Hb_003787_010 Hb_006059_050 Hb_006059_050 Hb_172426_040--Hb_006059_050 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190 Hb_002995_020 Hb_002995_020 Hb_000020_060--Hb_002995_020 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_001833_110 Hb_001833_110 Hb_001832_010--Hb_001833_110 Hb_015807_040 Hb_015807_040 Hb_001832_010--Hb_015807_040 Hb_000668_040 Hb_000668_040 Hb_001832_010--Hb_000668_040 Hb_001832_010--Hb_004724_340 Hb_001832_010--Hb_001360_050 Hb_004837_140 Hb_004837_140 Hb_001832_010--Hb_004837_140 Hb_000028_590--Hb_003918_010 Hb_008900_010 Hb_008900_010 Hb_000028_590--Hb_008900_010 Hb_001427_110 Hb_001427_110 Hb_000028_590--Hb_001427_110 Hb_000028_590--Hb_000020_060 Hb_005914_010 Hb_005914_010 Hb_000028_590--Hb_005914_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0933 11.2005 13.2961 12.1947 17.3918 20.1244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.0459 33.5568 32.2738 24.552 8.60094

CAGE analysis