Hb_000010_470

Information

Type -
Description -
Location Contig10: 514010-519520
Sequence    

Annotation

kegg
ID tcc:TCM_014563
description Galactose oxidase/kelch repeat superfamily protein isoform 1
nr
ID XP_007037872.1
description Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
swissprot
ID Q5R8W1
description Kelch domain-containing protein 4 OS=Pongo abelii GN=KLHDC4 PE=2 SV=1
trembl
ID A0A061FZ77
description Galactose oxidase/kelch repeat superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_014563 PE=4 SV=1
Gene Ontology
ID GO:0006869
description kelch domain-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00198: 495246-518517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_470 0.0 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
2 Hb_148209_110 0.0738401345 - - putative polyol transported protein 2 [Hevea brasiliensis]
3 Hb_155764_010 0.087558414 - - -
4 Hb_000010_460 0.0905090274 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
5 Hb_002216_040 0.0916823761 - - PREDICTED: protein PRD1 [Jatropha curcas]
6 Hb_004678_050 0.0990619004 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
7 Hb_006400_030 0.101147085 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
8 Hb_000061_320 0.1017825883 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
9 Hb_003408_020 0.1030541683 - - hypothetical protein RCOM_0453040 [Ricinus communis]
10 Hb_001688_020 0.1031310154 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
11 Hb_000834_270 0.103199712 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
12 Hb_004724_340 0.103705066 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
13 Hb_010080_090 0.1045126991 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
14 Hb_001360_050 0.1053702797 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
15 Hb_001881_020 0.1055394967 - - clathrin binding protein, putative [Ricinus communis]
16 Hb_003976_010 0.1079184534 - - methionine aminopeptidase, putative [Ricinus communis]
17 Hb_001832_010 0.1079965441 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
18 Hb_001833_110 0.1081131089 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003097_210 0.1088238556 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
20 Hb_000174_070 0.1088959174 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000010_470 Hb_000010_470 Hb_148209_110 Hb_148209_110 Hb_000010_470--Hb_148209_110 Hb_155764_010 Hb_155764_010 Hb_000010_470--Hb_155764_010 Hb_000010_460 Hb_000010_460 Hb_000010_470--Hb_000010_460 Hb_002216_040 Hb_002216_040 Hb_000010_470--Hb_002216_040 Hb_004678_050 Hb_004678_050 Hb_000010_470--Hb_004678_050 Hb_006400_030 Hb_006400_030 Hb_000010_470--Hb_006400_030 Hb_001500_040 Hb_001500_040 Hb_148209_110--Hb_001500_040 Hb_000602_010 Hb_000602_010 Hb_148209_110--Hb_000602_010 Hb_000563_550 Hb_000563_550 Hb_148209_110--Hb_000563_550 Hb_148209_110--Hb_004678_050 Hb_002551_020 Hb_002551_020 Hb_148209_110--Hb_002551_020 Hb_003097_210 Hb_003097_210 Hb_155764_010--Hb_003097_210 Hb_116898_010 Hb_116898_010 Hb_155764_010--Hb_116898_010 Hb_027073_040 Hb_027073_040 Hb_155764_010--Hb_027073_040 Hb_002301_230 Hb_002301_230 Hb_155764_010--Hb_002301_230 Hb_012114_040 Hb_012114_040 Hb_155764_010--Hb_012114_040 Hb_002061_040 Hb_002061_040 Hb_000010_460--Hb_002061_040 Hb_010080_090 Hb_010080_090 Hb_000010_460--Hb_010080_090 Hb_172426_040 Hb_172426_040 Hb_000010_460--Hb_172426_040 Hb_000020_060 Hb_000020_060 Hb_000010_460--Hb_000020_060 Hb_001832_010 Hb_001832_010 Hb_000010_460--Hb_001832_010 Hb_000028_590 Hb_000028_590 Hb_000010_460--Hb_000028_590 Hb_000503_050 Hb_000503_050 Hb_002216_040--Hb_000503_050 Hb_005699_070 Hb_005699_070 Hb_002216_040--Hb_005699_070 Hb_002685_020 Hb_002685_020 Hb_002216_040--Hb_002685_020 Hb_000834_270 Hb_000834_270 Hb_002216_040--Hb_000834_270 Hb_002216_040--Hb_004678_050 Hb_001360_050 Hb_001360_050 Hb_004678_050--Hb_001360_050 Hb_000025_120 Hb_000025_120 Hb_004678_050--Hb_000025_120 Hb_012675_060 Hb_012675_060 Hb_004678_050--Hb_012675_060 Hb_004678_050--Hb_000834_270 Hb_020419_010 Hb_020419_010 Hb_004678_050--Hb_020419_010 Hb_003020_230 Hb_003020_230 Hb_004678_050--Hb_003020_230 Hb_000483_200 Hb_000483_200 Hb_006400_030--Hb_000483_200 Hb_003032_040 Hb_003032_040 Hb_006400_030--Hb_003032_040 Hb_006400_060 Hb_006400_060 Hb_006400_030--Hb_006400_060 Hb_005618_170 Hb_005618_170 Hb_006400_030--Hb_005618_170 Hb_003976_010 Hb_003976_010 Hb_006400_030--Hb_003976_010 Hb_000107_620 Hb_000107_620 Hb_006400_030--Hb_000107_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2088 5.45553 4.35861 4.63393 13.5241 12.7997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0346 18.5103 25.5872 17.0189 5.70543

CAGE analysis