Hb_000011_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig11: 120739-126238
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18900g
description POPTRDRAFT_555118; hypothetical protein
nr
ID XP_012068750.1
description PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
swissprot
ID Q0JIC2
description Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1
trembl
ID A0A067L7W6
description MYB family protein OS=Jatropha curcas GN=JCGZ_24594 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor gamyb-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02955: 121167-122753 , PASA_asmbl_02956: 123286-125965 , PASA_asmbl_02958: 126685-126898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_050 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
2 Hb_000291_030 0.0727106767 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
3 Hb_000925_030 0.117031036 - - ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_000363_350 0.1181628505 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
5 Hb_000979_060 0.1199670721 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
6 Hb_174829_020 0.1228156108 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
7 Hb_002311_480 0.1243315168 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
8 Hb_171718_020 0.1252856186 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
9 Hb_000375_290 0.1253786349 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_002107_060 0.1256614576 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
11 Hb_004236_030 0.1284087955 - - unknown [Lotus japonicus]
12 Hb_000579_190 0.1324328441 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
13 Hb_000002_240 0.1344938423 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
14 Hb_000086_430 0.1358988652 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
15 Hb_000048_080 0.1380065554 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
16 Hb_000421_230 0.138393273 - - retinal degeneration B beta, putative [Ricinus communis]
17 Hb_001638_030 0.1398734789 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
18 Hb_000638_280 0.1420565087 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
19 Hb_004635_030 0.1439744752 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
20 Hb_003777_110 0.1444404496 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000011_050 Hb_000011_050 Hb_000291_030 Hb_000291_030 Hb_000011_050--Hb_000291_030 Hb_000925_030 Hb_000925_030 Hb_000011_050--Hb_000925_030 Hb_000363_350 Hb_000363_350 Hb_000011_050--Hb_000363_350 Hb_000979_060 Hb_000979_060 Hb_000011_050--Hb_000979_060 Hb_174829_020 Hb_174829_020 Hb_000011_050--Hb_174829_020 Hb_002311_480 Hb_002311_480 Hb_000011_050--Hb_002311_480 Hb_002631_320 Hb_002631_320 Hb_000291_030--Hb_002631_320 Hb_000579_190 Hb_000579_190 Hb_000291_030--Hb_000579_190 Hb_000291_030--Hb_000979_060 Hb_004635_030 Hb_004635_030 Hb_000291_030--Hb_004635_030 Hb_004236_030 Hb_004236_030 Hb_000291_030--Hb_004236_030 Hb_003147_060 Hb_003147_060 Hb_000925_030--Hb_003147_060 Hb_003925_040 Hb_003925_040 Hb_000925_030--Hb_003925_040 Hb_004108_240 Hb_004108_240 Hb_000925_030--Hb_004108_240 Hb_124677_040 Hb_124677_040 Hb_000925_030--Hb_124677_040 Hb_002107_060 Hb_002107_060 Hb_000925_030--Hb_002107_060 Hb_001638_030 Hb_001638_030 Hb_000925_030--Hb_001638_030 Hb_171718_020 Hb_171718_020 Hb_000363_350--Hb_171718_020 Hb_014231_020 Hb_014231_020 Hb_000363_350--Hb_014231_020 Hb_001307_190 Hb_001307_190 Hb_000363_350--Hb_001307_190 Hb_000000_340 Hb_000000_340 Hb_000363_350--Hb_000000_340 Hb_000062_360 Hb_000062_360 Hb_000363_350--Hb_000062_360 Hb_000684_100 Hb_000684_100 Hb_000979_060--Hb_000684_100 Hb_005194_020 Hb_005194_020 Hb_000979_060--Hb_005194_020 Hb_000979_060--Hb_002311_480 Hb_000009_220 Hb_000009_220 Hb_000979_060--Hb_000009_220 Hb_001322_020 Hb_001322_020 Hb_000979_060--Hb_001322_020 Hb_000979_060--Hb_000579_190 Hb_000512_010 Hb_000512_010 Hb_174829_020--Hb_000512_010 Hb_174829_020--Hb_002311_480 Hb_000291_010 Hb_000291_010 Hb_174829_020--Hb_000291_010 Hb_052764_030 Hb_052764_030 Hb_174829_020--Hb_052764_030 Hb_000019_040 Hb_000019_040 Hb_174829_020--Hb_000019_040 Hb_001500_120 Hb_001500_120 Hb_002311_480--Hb_001500_120 Hb_011671_310 Hb_011671_310 Hb_002311_480--Hb_011671_310 Hb_005977_030 Hb_005977_030 Hb_002311_480--Hb_005977_030 Hb_004943_030 Hb_004943_030 Hb_002311_480--Hb_004943_030 Hb_000048_080 Hb_000048_080 Hb_002311_480--Hb_000048_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.79583 8.0301 9.47368 2.55508 1.55321 1.98109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35644 3.82526 1.30692 2.3489 1.05407

CAGE analysis