Hb_000011_080

Information

Type transcription factor
Description TF Family: SET
Location Contig11: 186184-192196
Sequence    

Annotation

kegg
ID rcu:RCOM_0622490
description histone-lysine n-methyltransferase, suvh, putative (EC:2.1.1.43)
nr
ID XP_012068760.1
description PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
swissprot
ID Q9C5P4
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2
trembl
ID A0A067KWR5
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_24601 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n- h3 lysine-9 specific suvh3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02968: 185783-188171 , PASA_asmbl_02969: 188194-192155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_080 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
2 Hb_001771_130 0.0813616732 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
3 Hb_033152_080 0.0849038142 - - RNA-binding protein Nova-1, putative [Ricinus communis]
4 Hb_000230_080 0.0939107952 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
5 Hb_004734_060 0.0955973438 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
6 Hb_000173_400 0.0979111607 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
7 Hb_005324_010 0.1006247069 - - Chaperone protein dnaJ, putative [Ricinus communis]
8 Hb_000209_020 0.101210143 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
9 Hb_000413_180 0.1039141634 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
10 Hb_005306_130 0.1051306021 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_001943_010 0.1061638294 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
12 Hb_001307_140 0.1069272336 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
13 Hb_000386_030 0.1076235878 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
14 Hb_001437_180 0.1077036653 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
15 Hb_000077_370 0.1083287049 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]
16 Hb_010080_060 0.1084289866 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_005399_010 0.1110636779 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
18 Hb_010710_010 0.1123076604 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
19 Hb_004310_050 0.113617354 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
20 Hb_004055_040 0.1140536652 - - Phospholipid-transporting ATPase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000011_080 Hb_000011_080 Hb_001771_130 Hb_001771_130 Hb_000011_080--Hb_001771_130 Hb_033152_080 Hb_033152_080 Hb_000011_080--Hb_033152_080 Hb_000230_080 Hb_000230_080 Hb_000011_080--Hb_000230_080 Hb_004734_060 Hb_004734_060 Hb_000011_080--Hb_004734_060 Hb_000173_400 Hb_000173_400 Hb_000011_080--Hb_000173_400 Hb_005324_010 Hb_005324_010 Hb_000011_080--Hb_005324_010 Hb_001437_180 Hb_001437_180 Hb_001771_130--Hb_001437_180 Hb_001871_040 Hb_001871_040 Hb_001771_130--Hb_001871_040 Hb_001771_130--Hb_004734_060 Hb_001943_010 Hb_001943_010 Hb_001771_130--Hb_001943_010 Hb_000386_030 Hb_000386_030 Hb_001771_130--Hb_000386_030 Hb_033152_080--Hb_004734_060 Hb_000803_190 Hb_000803_190 Hb_033152_080--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_033152_080--Hb_000953_010 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_000184_130 Hb_000184_130 Hb_033152_080--Hb_000184_130 Hb_000209_020 Hb_000209_020 Hb_033152_080--Hb_000209_020 Hb_010710_010 Hb_010710_010 Hb_000230_080--Hb_010710_010 Hb_000413_180 Hb_000413_180 Hb_000230_080--Hb_000413_180 Hb_000207_390 Hb_000207_390 Hb_000230_080--Hb_000207_390 Hb_002307_100 Hb_002307_100 Hb_000230_080--Hb_002307_100 Hb_000390_070 Hb_000390_070 Hb_000230_080--Hb_000390_070 Hb_003750_080 Hb_003750_080 Hb_000230_080--Hb_003750_080 Hb_004734_060--Hb_000803_190 Hb_004734_060--Hb_000953_010 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_004734_060--Hb_000184_130 Hb_000173_400--Hb_000953_010 Hb_004055_040 Hb_004055_040 Hb_000173_400--Hb_004055_040 Hb_000173_400--Hb_004734_060 Hb_002928_060 Hb_002928_060 Hb_000173_400--Hb_002928_060 Hb_000173_400--Hb_000803_190 Hb_000173_400--Hb_001771_130 Hb_005306_130 Hb_005306_130 Hb_005324_010--Hb_005306_130 Hb_005324_010--Hb_004734_060 Hb_005324_010--Hb_000209_020 Hb_005324_010--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_005324_010--Hb_000836_360 Hb_005324_010--Hb_033152_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.312 71.3798 5.85574 15.572 69.6062 120.771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.5204 24.3107 74.9826 55.0862 16.3093

CAGE analysis