Hb_000011_090

Information

Type -
Description -
Location Contig11: 192353-194054
Sequence    

Annotation

kegg
ID rcu:RCOM_0622500
description HSP90 co-chaperone, putative
nr
ID XP_012068763.1
description PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
swissprot
ID P0C8Z0
description Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2
trembl
ID B9SHW3
description HSP90 co-chaperone, putative OS=Ricinus communis GN=RCOM_0622500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_090 0.0 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
2 Hb_003659_020 0.2942151403 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
3 Hb_008035_050 0.2943252288 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
4 Hb_139691_010 0.2947672821 - - -
5 Hb_000392_290 0.3014703025 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_006569_070 0.3087396858 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_001789_170 0.3131870707 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
8 Hb_000856_160 0.3256307137 - - -
9 Hb_002498_130 0.3258635622 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
10 Hb_000781_050 0.3287396223 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_011356_020 0.3370702459 - - -
12 Hb_024247_020 0.3732722676 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
13 Hb_007012_070 0.3760719497 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
14 Hb_001195_540 0.3888229342 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
15 Hb_000204_200 0.3951626152 - - hypothetical protein VITISV_019818 [Vitis vinifera]
16 Hb_009474_010 0.3951682139 - - -
17 Hb_030630_010 0.3953086366 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
18 Hb_007768_030 0.3955185403 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000661_190 0.4019241446 - - PREDICTED: protein spt2-like [Jatropha curcas]
20 Hb_002259_010 0.4088797833 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000011_090 Hb_000011_090 Hb_003659_020 Hb_003659_020 Hb_000011_090--Hb_003659_020 Hb_008035_050 Hb_008035_050 Hb_000011_090--Hb_008035_050 Hb_139691_010 Hb_139691_010 Hb_000011_090--Hb_139691_010 Hb_000392_290 Hb_000392_290 Hb_000011_090--Hb_000392_290 Hb_006569_070 Hb_006569_070 Hb_000011_090--Hb_006569_070 Hb_001789_170 Hb_001789_170 Hb_000011_090--Hb_001789_170 Hb_003659_020--Hb_008035_050 Hb_003659_020--Hb_139691_010 Hb_003659_020--Hb_000392_290 Hb_003659_020--Hb_001789_170 Hb_002498_130 Hb_002498_130 Hb_003659_020--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_003659_020--Hb_000781_050 Hb_008035_050--Hb_139691_010 Hb_008035_050--Hb_000392_290 Hb_008035_050--Hb_001789_170 Hb_008035_050--Hb_002498_130 Hb_008035_050--Hb_000781_050 Hb_139691_010--Hb_000392_290 Hb_139691_010--Hb_001789_170 Hb_139691_010--Hb_002498_130 Hb_139691_010--Hb_000781_050 Hb_000392_290--Hb_001789_170 Hb_000392_290--Hb_002498_130 Hb_000392_290--Hb_000781_050 Hb_098785_010 Hb_098785_010 Hb_006569_070--Hb_098785_010 Hb_001221_280 Hb_001221_280 Hb_006569_070--Hb_001221_280 Hb_007012_070 Hb_007012_070 Hb_006569_070--Hb_007012_070 Hb_003581_190 Hb_003581_190 Hb_006569_070--Hb_003581_190 Hb_010515_030 Hb_010515_030 Hb_006569_070--Hb_010515_030 Hb_001789_170--Hb_002498_130 Hb_001789_170--Hb_000781_050 Hb_011356_020 Hb_011356_020 Hb_001789_170--Hb_011356_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0965756 0 0 0.056268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.193028 0 0

CAGE analysis