Hb_000011_100

Information

Type -
Description -
Location Contig11: 200727-206561
Sequence    

Annotation

kegg
ID rcu:RCOM_0622540
description Cell division control protein, putative
nr
ID XP_012068765.1
description PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
swissprot
ID Q9UUH0
description Uncharacterized protein C630.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC630.12 PE=3 SV=1
trembl
ID B9SHW7
description Cell division control protein, putative OS=Ricinus communis GN=RCOM_0622540 PE=4 SV=1
Gene Ontology
ID GO:0005768
description cell division control

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02970: 200695-201807 , PASA_asmbl_02971: 202701-205577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_100 0.0 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
2 Hb_004267_040 0.0446715111 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
3 Hb_000710_040 0.0472385125 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
4 Hb_001430_080 0.0497750068 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
5 Hb_000398_080 0.0502174685 - - tip120, putative [Ricinus communis]
6 Hb_000120_280 0.0561589918 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
7 Hb_000563_130 0.0607722218 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
8 Hb_002205_250 0.0614915566 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
9 Hb_183510_020 0.0616784267 - - coated vesicle membrane protein, putative [Ricinus communis]
10 Hb_003861_050 0.0623392099 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
11 Hb_000174_060 0.063067414 - - zinc finger family protein [Populus trichocarpa]
12 Hb_000227_220 0.0632644964 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
13 Hb_001814_030 0.0635400277 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
14 Hb_000614_210 0.0649732812 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
15 Hb_140049_040 0.0652418176 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
16 Hb_005867_070 0.0660321725 - - DNA binding protein, putative [Ricinus communis]
17 Hb_001277_020 0.0660927169 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
18 Hb_000975_040 0.0662993833 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
19 Hb_003835_070 0.0670724907 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
20 Hb_000441_120 0.0678353591 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000011_100 Hb_000011_100 Hb_004267_040 Hb_004267_040 Hb_000011_100--Hb_004267_040 Hb_000710_040 Hb_000710_040 Hb_000011_100--Hb_000710_040 Hb_001430_080 Hb_001430_080 Hb_000011_100--Hb_001430_080 Hb_000398_080 Hb_000398_080 Hb_000011_100--Hb_000398_080 Hb_000120_280 Hb_000120_280 Hb_000011_100--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_000011_100--Hb_000563_130 Hb_004267_040--Hb_000120_280 Hb_004267_040--Hb_000563_130 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_004267_040--Hb_000398_080 Hb_000603_030 Hb_000603_030 Hb_004267_040--Hb_000603_030 Hb_001089_030 Hb_001089_030 Hb_000710_040--Hb_001089_030 Hb_000227_220 Hb_000227_220 Hb_000710_040--Hb_000227_220 Hb_183510_020 Hb_183510_020 Hb_000710_040--Hb_183510_020 Hb_057688_010 Hb_057688_010 Hb_000710_040--Hb_057688_010 Hb_000710_040--Hb_001430_080 Hb_001277_020 Hb_001277_020 Hb_001430_080--Hb_001277_020 Hb_004976_010 Hb_004976_010 Hb_001430_080--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001430_080--Hb_000645_170 Hb_003835_070 Hb_003835_070 Hb_001430_080--Hb_003835_070 Hb_000879_040 Hb_000879_040 Hb_001430_080--Hb_000879_040 Hb_007657_020 Hb_007657_020 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000398_080--Hb_000603_030 Hb_000398_080--Hb_000563_130 Hb_000477_050 Hb_000477_050 Hb_000120_280--Hb_000477_050 Hb_000120_280--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000120_280--Hb_001009_320 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_003645_060 Hb_003645_060 Hb_000563_130--Hb_003645_060 Hb_000563_130--Hb_000603_030 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.36398 11.5283 9.89211 8.86552 11.0589 8.70136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.27789 7.25789 6.13505 11.7482 8.83055

CAGE analysis