Hb_000011_190

Information

Type -
Description -
Location Contig11: 268344-276907
Sequence    

Annotation

kegg
ID fve:101300367
description protein STRUBBELIG-RECEPTOR FAMILY 6-like
nr
ID XP_012068778.1
description PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
swissprot
ID Q9C8M9
description Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1
trembl
ID A0A067L933
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24613 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein strubbelig-receptor family 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02978: 268413-276857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_190 0.0 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
2 Hb_005503_040 0.0833064471 - - PREDICTED: AMP deaminase [Jatropha curcas]
3 Hb_004668_060 0.0871641894 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
4 Hb_000982_060 0.0872703459 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
5 Hb_007508_080 0.087356771 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
6 Hb_001541_230 0.0894006994 - - unnamed protein product [Vitis vinifera]
7 Hb_005000_320 0.0895622037 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
8 Hb_080313_010 0.0973329538 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
9 Hb_000683_070 0.0974400997 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
10 Hb_000000_270 0.100840091 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
11 Hb_000523_040 0.1027635505 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
12 Hb_006816_050 0.1031413296 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
13 Hb_000617_100 0.1072184161 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
14 Hb_004631_180 0.1097572684 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
15 Hb_001033_050 0.1108965817 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
16 Hb_000366_120 0.1110076878 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
17 Hb_000780_170 0.1115603912 - - PREDICTED: OBERON-like protein [Jatropha curcas]
18 Hb_000071_030 0.1126024204 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
19 Hb_009620_050 0.1126516154 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
20 Hb_001195_560 0.1127419462 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000011_190 Hb_000011_190 Hb_005503_040 Hb_005503_040 Hb_000011_190--Hb_005503_040 Hb_004668_060 Hb_004668_060 Hb_000011_190--Hb_004668_060 Hb_000982_060 Hb_000982_060 Hb_000011_190--Hb_000982_060 Hb_007508_080 Hb_007508_080 Hb_000011_190--Hb_007508_080 Hb_001541_230 Hb_001541_230 Hb_000011_190--Hb_001541_230 Hb_005000_320 Hb_005000_320 Hb_000011_190--Hb_005000_320 Hb_080313_010 Hb_080313_010 Hb_005503_040--Hb_080313_010 Hb_000683_070 Hb_000683_070 Hb_005503_040--Hb_000683_070 Hb_005503_040--Hb_004668_060 Hb_000617_100 Hb_000617_100 Hb_005503_040--Hb_000617_100 Hb_005503_040--Hb_007508_080 Hb_100215_010 Hb_100215_010 Hb_005503_040--Hb_100215_010 Hb_001377_160 Hb_001377_160 Hb_004668_060--Hb_001377_160 Hb_004668_060--Hb_007508_080 Hb_001033_050 Hb_001033_050 Hb_004668_060--Hb_001033_050 Hb_000139_130 Hb_000139_130 Hb_004668_060--Hb_000139_130 Hb_000046_070 Hb_000046_070 Hb_004668_060--Hb_000046_070 Hb_135831_010 Hb_135831_010 Hb_000982_060--Hb_135831_010 Hb_000000_270 Hb_000000_270 Hb_000982_060--Hb_000000_270 Hb_000442_150 Hb_000442_150 Hb_000982_060--Hb_000442_150 Hb_003893_030 Hb_003893_030 Hb_000982_060--Hb_003893_030 Hb_001135_130 Hb_001135_130 Hb_000982_060--Hb_001135_130 Hb_000982_060--Hb_000683_070 Hb_008103_020 Hb_008103_020 Hb_007508_080--Hb_008103_020 Hb_007508_080--Hb_000139_130 Hb_007508_080--Hb_001377_160 Hb_004109_230 Hb_004109_230 Hb_007508_080--Hb_004109_230 Hb_030385_010 Hb_030385_010 Hb_001541_230--Hb_030385_010 Hb_001541_230--Hb_000000_270 Hb_000227_090 Hb_000227_090 Hb_001541_230--Hb_000227_090 Hb_006816_050 Hb_006816_050 Hb_001541_230--Hb_006816_050 Hb_001541_230--Hb_005503_040 Hb_000309_040 Hb_000309_040 Hb_005000_320--Hb_000309_040 Hb_000933_010 Hb_000933_010 Hb_005000_320--Hb_000933_010 Hb_002235_210 Hb_002235_210 Hb_005000_320--Hb_002235_210 Hb_001077_030 Hb_001077_030 Hb_005000_320--Hb_001077_030 Hb_001051_080 Hb_001051_080 Hb_005000_320--Hb_001051_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.8479 56.4171 24.4288 56.3861 50.2276 47.6709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.6781 17.5375 23.0253 28.2269 17.1627

CAGE analysis