Hb_000011_200

Information

Type -
Description -
Location Contig11: 277061-280758
Sequence    

Annotation

kegg
ID tcc:TCM_029263
description Regulatory particle triple-A 1A
nr
ID XP_012068779.1
description PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
swissprot
ID Q9FXT9
description 26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1
trembl
ID A0A067L7Y9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24614 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 26s protease regulatory subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02980: 277089-280806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_200 0.0 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
2 Hb_000225_040 0.0374469142 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
3 Hb_000193_190 0.0509912536 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
4 Hb_004410_030 0.0511899605 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_003158_010 0.0527794541 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
6 Hb_006827_020 0.05534198 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007317_110 0.0562910153 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
8 Hb_000085_160 0.0569171596 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
9 Hb_004619_030 0.0573428325 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
10 Hb_000123_210 0.0574629378 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
11 Hb_003025_110 0.0576663221 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
12 Hb_002271_030 0.0616363876 - - Vacuolar protein sorting protein, putative [Ricinus communis]
13 Hb_003525_010 0.0619586345 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
14 Hb_010618_010 0.0626033338 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
15 Hb_000808_270 0.0647285903 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
16 Hb_000329_470 0.0648459629 - - ccr4-not transcription complex, putative [Ricinus communis]
17 Hb_001493_030 0.0656594793 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
18 Hb_001143_160 0.0660704568 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
19 Hb_003163_020 0.0672739942 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
20 Hb_003058_190 0.0674470623 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000011_200 Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000011_200--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000011_200--Hb_000193_190 Hb_004410_030 Hb_004410_030 Hb_000011_200--Hb_004410_030 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000011_200--Hb_007317_110 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_000205_100 Hb_000205_100 Hb_000193_190--Hb_000205_100 Hb_001946_010 Hb_001946_010 Hb_000193_190--Hb_001946_010 Hb_007576_110 Hb_007576_110 Hb_000193_190--Hb_007576_110 Hb_011930_160 Hb_011930_160 Hb_000193_190--Hb_011930_160 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_003025_110 Hb_003025_110 Hb_004410_030--Hb_003025_110 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030 Hb_003158_010--Hb_000329_470 Hb_003158_010--Hb_167498_010 Hb_002025_020 Hb_002025_020 Hb_003158_010--Hb_002025_020 Hb_000347_070 Hb_000347_070 Hb_003158_010--Hb_000347_070 Hb_006827_020--Hb_007317_110 Hb_000808_270 Hb_000808_270 Hb_006827_020--Hb_000808_270 Hb_007059_010 Hb_007059_010 Hb_006827_020--Hb_007059_010 Hb_000538_100 Hb_000538_100 Hb_006827_020--Hb_000538_100 Hb_003813_130 Hb_003813_130 Hb_006827_020--Hb_003813_130 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_003665_060 Hb_003665_060 Hb_007317_110--Hb_003665_060 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007317_110--Hb_007059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.5156 36.1832 30.4335 36.2395 59.9192 65.2942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.2816 49.3023 54.2137 55.7053 32.9723

CAGE analysis