Hb_000011_220

Information

Type -
Description -
Location Contig11: 290091-293394
Sequence    

Annotation

kegg
ID rcu:RCOM_0995430
description hypothetical protein
nr
ID XP_012068783.1
description PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L061
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24617 PE=4 SV=1
Gene Ontology
ID GO:0016740
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02984: 290105-292230 , PASA_asmbl_02985: 290495-291931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_220 0.0 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
2 Hb_009674_050 0.1094328667 - - Endosomal P24A protein precursor, putative [Ricinus communis]
3 Hb_002164_020 0.1095073717 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005348_110 0.1173239242 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_003746_010 0.1193621471 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010175_030 0.1267185231 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
7 Hb_059741_010 0.1287465875 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
8 Hb_000270_660 0.1310428997 - - purine permease, putative [Ricinus communis]
9 Hb_021495_020 0.1311773096 - - chitinase, putative [Ricinus communis]
10 Hb_009252_010 0.1321658247 - - PREDICTED: kinesin light chain [Jatropha curcas]
11 Hb_001969_140 0.1332341604 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
12 Hb_002129_020 0.1334734284 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
13 Hb_001493_060 0.1359709429 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
14 Hb_000417_170 0.1371734448 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
15 Hb_001216_110 0.1374663717 - - PREDICTED: protein GPR107-like [Jatropha curcas]
16 Hb_001049_150 0.1386238774 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
17 Hb_000120_860 0.1425218054 - - nucellin, putative [Ricinus communis]
18 Hb_005116_140 0.1428765192 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
19 Hb_000684_310 0.143487916 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
20 Hb_030959_010 0.1444417672 - - cullin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000011_220 Hb_000011_220 Hb_009674_050 Hb_009674_050 Hb_000011_220--Hb_009674_050 Hb_002164_020 Hb_002164_020 Hb_000011_220--Hb_002164_020 Hb_005348_110 Hb_005348_110 Hb_000011_220--Hb_005348_110 Hb_003746_010 Hb_003746_010 Hb_000011_220--Hb_003746_010 Hb_010175_030 Hb_010175_030 Hb_000011_220--Hb_010175_030 Hb_059741_010 Hb_059741_010 Hb_000011_220--Hb_059741_010 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_009674_050--Hb_005348_110 Hb_009252_010 Hb_009252_010 Hb_009674_050--Hb_009252_010 Hb_030959_010 Hb_030959_010 Hb_009674_050--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_009674_050--Hb_005116_140 Hb_001493_060 Hb_001493_060 Hb_002164_020--Hb_001493_060 Hb_026549_070 Hb_026549_070 Hb_002164_020--Hb_026549_070 Hb_009079_050 Hb_009079_050 Hb_002164_020--Hb_009079_050 Hb_000139_300 Hb_000139_300 Hb_002164_020--Hb_000139_300 Hb_009913_040 Hb_009913_040 Hb_002164_020--Hb_009913_040 Hb_005348_110--Hb_003746_010 Hb_001216_110 Hb_001216_110 Hb_005348_110--Hb_001216_110 Hb_005348_110--Hb_009252_010 Hb_005348_110--Hb_010175_030 Hb_001029_040 Hb_001029_040 Hb_003746_010--Hb_001029_040 Hb_005192_010 Hb_005192_010 Hb_003746_010--Hb_005192_010 Hb_001882_020 Hb_001882_020 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_000390_030 Hb_000390_030 Hb_010175_030--Hb_000390_030 Hb_010175_030--Hb_009674_050 Hb_010175_030--Hb_009252_010 Hb_177343_010 Hb_177343_010 Hb_010175_030--Hb_177343_010 Hb_011310_050 Hb_011310_050 Hb_059741_010--Hb_011310_050 Hb_000679_040 Hb_000679_040 Hb_059741_010--Hb_000679_040 Hb_059741_010--Hb_001216_110 Hb_000244_260 Hb_000244_260 Hb_059741_010--Hb_000244_260 Hb_059741_010--Hb_177343_010 Hb_001210_040 Hb_001210_040 Hb_059741_010--Hb_001210_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22196 6.33009 9.75123 43.1227 11.9141 11.6493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.96458 3.72618 9.00868 11.7543 43.2658

CAGE analysis