Hb_000011_270

Information

Type -
Description -
Location Contig11: 314283-320563
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07060g
description POPTRDRAFT_553831; pumilio/Puf RNA-binding domain-containing family protein
nr
ID XP_012068792.1
description PREDICTED: pumilio homolog 23 [Jatropha curcas]
swissprot
ID Q9C552
description Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1
trembl
ID A0A067KWN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24625 PE=4 SV=1
Gene Ontology
ID GO:0003723
description pumilio homolog 23 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02997: 314737-317503 , PASA_asmbl_02998: 316214-316422 , PASA_asmbl_02999: 317515-320353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_270 0.0 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
2 Hb_003093_040 0.0569261589 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
3 Hb_001221_180 0.058193718 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_000568_050 0.0676342982 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
5 Hb_000175_410 0.0683598781 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
6 Hb_002357_070 0.0684071079 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
7 Hb_000001_170 0.0703231317 - - amino acid transporter, putative [Ricinus communis]
8 Hb_012055_110 0.0711066511 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
9 Hb_000826_070 0.0733812043 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008397_010 0.0774713436 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
11 Hb_013358_070 0.0798008882 - - protein with unknown function [Ricinus communis]
12 Hb_001999_140 0.0798475279 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_060980_010 0.0806178325 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
14 Hb_004306_030 0.0829078815 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
15 Hb_000189_320 0.084310904 - - PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Jatropha curcas]
16 Hb_027472_220 0.0844712885 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
17 Hb_007955_050 0.0847521733 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
18 Hb_000336_020 0.0848903946 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
19 Hb_001085_290 0.0865807296 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
20 Hb_013459_020 0.0879565467 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]

Gene co-expression network

sample Hb_000011_270 Hb_000011_270 Hb_003093_040 Hb_003093_040 Hb_000011_270--Hb_003093_040 Hb_001221_180 Hb_001221_180 Hb_000011_270--Hb_001221_180 Hb_000568_050 Hb_000568_050 Hb_000011_270--Hb_000568_050 Hb_000175_410 Hb_000175_410 Hb_000011_270--Hb_000175_410 Hb_002357_070 Hb_002357_070 Hb_000011_270--Hb_002357_070 Hb_000001_170 Hb_000001_170 Hb_000011_270--Hb_000001_170 Hb_003093_040--Hb_000175_410 Hb_003093_040--Hb_001221_180 Hb_001999_140 Hb_001999_140 Hb_003093_040--Hb_001999_140 Hb_002374_230 Hb_002374_230 Hb_003093_040--Hb_002374_230 Hb_000661_120 Hb_000661_120 Hb_003093_040--Hb_000661_120 Hb_001221_180--Hb_002357_070 Hb_019840_030 Hb_019840_030 Hb_001221_180--Hb_019840_030 Hb_060980_010 Hb_060980_010 Hb_001221_180--Hb_060980_010 Hb_001221_180--Hb_000568_050 Hb_011174_020 Hb_011174_020 Hb_000568_050--Hb_011174_020 Hb_012055_110 Hb_012055_110 Hb_000568_050--Hb_012055_110 Hb_006663_060 Hb_006663_060 Hb_000568_050--Hb_006663_060 Hb_000608_300 Hb_000608_300 Hb_000568_050--Hb_000608_300 Hb_000826_070 Hb_000826_070 Hb_000568_050--Hb_000826_070 Hb_003186_020 Hb_003186_020 Hb_000175_410--Hb_003186_020 Hb_013358_070 Hb_013358_070 Hb_000175_410--Hb_013358_070 Hb_031284_010 Hb_031284_010 Hb_000175_410--Hb_031284_010 Hb_000523_080 Hb_000523_080 Hb_000175_410--Hb_000523_080 Hb_007245_020 Hb_007245_020 Hb_002357_070--Hb_007245_020 Hb_123531_010 Hb_123531_010 Hb_002357_070--Hb_123531_010 Hb_000934_210 Hb_000934_210 Hb_002357_070--Hb_000934_210 Hb_000318_150 Hb_000318_150 Hb_002357_070--Hb_000318_150 Hb_002357_070--Hb_012055_110 Hb_000001_170--Hb_060980_010 Hb_012286_040 Hb_012286_040 Hb_000001_170--Hb_012286_040 Hb_102698_010 Hb_102698_010 Hb_000001_170--Hb_102698_010 Hb_002749_060 Hb_002749_060 Hb_000001_170--Hb_002749_060 Hb_000238_030 Hb_000238_030 Hb_000001_170--Hb_000238_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87223 5.45906 6.06848 5.16873 4.54673 4.9057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52988 2.68679 1.8046 7.65102 7.57511

CAGE analysis