Hb_000011_290

Information

Type -
Description -
Location Contig11: 336443-341279
Sequence    

Annotation

kegg
ID tcc:TCM_029248
description Alanine aminotransferase 2
nr
ID XP_012068795.1
description PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
swissprot
ID Q9LDV4
description Alanine aminotransferase 2, mitochondrial OS=Arabidopsis thaliana GN=ALAAT2 PE=2 SV=1
trembl
ID A0A067L953
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24628 PE=4 SV=1
Gene Ontology
ID GO:0008483
description alanine aminotransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03003: 336576-341268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_290 0.0 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
2 Hb_001699_200 0.1402527893 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
3 Hb_007943_160 0.1643591143 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
4 Hb_004079_080 0.1883465212 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
5 Hb_001971_060 0.188435035 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
6 Hb_000061_090 0.190434004 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
7 Hb_002539_020 0.1911971827 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
8 Hb_138710_010 0.1942106375 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
9 Hb_006846_120 0.1961041413 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
10 Hb_004976_050 0.1998820082 - - -
11 Hb_007423_020 0.2028559081 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
12 Hb_003098_080 0.2030324059 - - -
13 Hb_001332_040 0.2049409212 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
14 Hb_014894_010 0.2076306401 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
15 Hb_100147_010 0.2080432306 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
16 Hb_012545_090 0.2092113318 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
17 Hb_003226_120 0.2097671716 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000120_720 0.2152708625 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
19 Hb_094437_060 0.2156804725 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
20 Hb_000320_300 0.2166910383 - - prephenate dehydratase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000011_290 Hb_000011_290 Hb_001699_200 Hb_001699_200 Hb_000011_290--Hb_001699_200 Hb_007943_160 Hb_007943_160 Hb_000011_290--Hb_007943_160 Hb_004079_080 Hb_004079_080 Hb_000011_290--Hb_004079_080 Hb_001971_060 Hb_001971_060 Hb_000011_290--Hb_001971_060 Hb_000061_090 Hb_000061_090 Hb_000011_290--Hb_000061_090 Hb_002539_020 Hb_002539_020 Hb_000011_290--Hb_002539_020 Hb_000614_170 Hb_000614_170 Hb_001699_200--Hb_000614_170 Hb_000320_300 Hb_000320_300 Hb_001699_200--Hb_000320_300 Hb_100147_010 Hb_100147_010 Hb_001699_200--Hb_100147_010 Hb_005873_010 Hb_005873_010 Hb_001699_200--Hb_005873_010 Hb_001699_200--Hb_001971_060 Hb_003226_120 Hb_003226_120 Hb_007943_160--Hb_003226_120 Hb_012545_090 Hb_012545_090 Hb_007943_160--Hb_012545_090 Hb_006275_010 Hb_006275_010 Hb_007943_160--Hb_006275_010 Hb_007943_160--Hb_004079_080 Hb_039145_010 Hb_039145_010 Hb_007943_160--Hb_039145_010 Hb_000621_020 Hb_000621_020 Hb_004079_080--Hb_000621_020 Hb_001214_090 Hb_001214_090 Hb_004079_080--Hb_001214_090 Hb_001623_160 Hb_001623_160 Hb_004079_080--Hb_001623_160 Hb_004079_080--Hb_001971_060 Hb_016522_010 Hb_016522_010 Hb_004079_080--Hb_016522_010 Hb_004079_080--Hb_100147_010 Hb_000381_110 Hb_000381_110 Hb_001971_060--Hb_000381_110 Hb_001971_060--Hb_100147_010 Hb_001971_060--Hb_001623_160 Hb_029385_010 Hb_029385_010 Hb_001971_060--Hb_029385_010 Hb_001728_140 Hb_001728_140 Hb_001971_060--Hb_001728_140 Hb_000414_110 Hb_000414_110 Hb_000061_090--Hb_000414_110 Hb_000879_190 Hb_000879_190 Hb_000061_090--Hb_000879_190 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_003947_040 Hb_003947_040 Hb_000061_090--Hb_003947_040 Hb_000061_090--Hb_002539_020 Hb_002539_010 Hb_002539_010 Hb_002539_020--Hb_002539_010 Hb_006846_120 Hb_006846_120 Hb_002539_020--Hb_006846_120 Hb_008226_070 Hb_008226_070 Hb_002539_020--Hb_008226_070 Hb_002539_020--Hb_007423_020 Hb_002539_020--Hb_100147_010 Hb_000094_370 Hb_000094_370 Hb_002539_020--Hb_000094_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13074 1.09787 8.29617 12.0689 3.40977 4.99236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9194 12.1447 13.777 62.6342 10.8693

CAGE analysis