Hb_000011_410

Information

Type -
Description -
Location Contig11: 438168-439164
Sequence    

Annotation

kegg
ID rcu:RCOM_0044190
description hypothetical protein
nr
ID XP_002533240.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T4S1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0044190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_410 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008279_030 0.2186555092 - - conserved hypothetical protein [Ricinus communis]
3 Hb_107495_040 0.2217890837 - - PREDICTED: 12-oxophytodienoate reductase 2-like [Citrus sinensis]
4 Hb_001606_060 0.237160614 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000025_610 0.2406637641 - - annexin, putative [Ricinus communis]
6 Hb_000069_710 0.2446451649 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
7 Hb_121881_010 0.2486318669 - - hypothetical protein POPTR_0015s15770g [Populus trichocarpa]
8 Hb_003813_180 0.2543743334 - - sterol desaturase, putative [Ricinus communis]
9 Hb_003549_080 0.2550478117 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
10 Hb_009252_020 0.2572119642 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
11 Hb_001904_050 0.2631051178 - - alpha-tubulin 1 [Hevea brasiliensis]
12 Hb_009111_020 0.2646898071 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
13 Hb_002174_040 0.2664477044 - - DNAJ heat shock family protein [Theobroma cacao]
14 Hb_000854_040 0.2672084597 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
15 Hb_000197_200 0.268358846 - - Sec14 cytosolic factor, putative [Ricinus communis]
16 Hb_011004_050 0.2692746393 - - PREDICTED: kinesin-13A [Jatropha curcas]
17 Hb_000300_690 0.2695305583 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
18 Hb_000703_280 0.2705200025 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
19 Hb_000566_050 0.2706411314 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
20 Hb_005539_370 0.2709876719 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000011_410 Hb_000011_410 Hb_008279_030 Hb_008279_030 Hb_000011_410--Hb_008279_030 Hb_107495_040 Hb_107495_040 Hb_000011_410--Hb_107495_040 Hb_001606_060 Hb_001606_060 Hb_000011_410--Hb_001606_060 Hb_000025_610 Hb_000025_610 Hb_000011_410--Hb_000025_610 Hb_000069_710 Hb_000069_710 Hb_000011_410--Hb_000069_710 Hb_121881_010 Hb_121881_010 Hb_000011_410--Hb_121881_010 Hb_003813_180 Hb_003813_180 Hb_008279_030--Hb_003813_180 Hb_011004_050 Hb_011004_050 Hb_008279_030--Hb_011004_050 Hb_002662_040 Hb_002662_040 Hb_008279_030--Hb_002662_040 Hb_006634_100 Hb_006634_100 Hb_008279_030--Hb_006634_100 Hb_004163_030 Hb_004163_030 Hb_008279_030--Hb_004163_030 Hb_107495_040--Hb_001606_060 Hb_004223_050 Hb_004223_050 Hb_107495_040--Hb_004223_050 Hb_000300_690 Hb_000300_690 Hb_107495_040--Hb_000300_690 Hb_002174_040 Hb_002174_040 Hb_107495_040--Hb_002174_040 Hb_000359_310 Hb_000359_310 Hb_107495_040--Hb_000359_310 Hb_000352_120 Hb_000352_120 Hb_107495_040--Hb_000352_120 Hb_001606_060--Hb_002174_040 Hb_001606_060--Hb_121881_010 Hb_008566_040 Hb_008566_040 Hb_001606_060--Hb_008566_040 Hb_003935_060 Hb_003935_060 Hb_001606_060--Hb_003935_060 Hb_001102_020 Hb_001102_020 Hb_001606_060--Hb_001102_020 Hb_099084_010 Hb_099084_010 Hb_000025_610--Hb_099084_010 Hb_000256_040 Hb_000256_040 Hb_000025_610--Hb_000256_040 Hb_000566_050 Hb_000566_050 Hb_000025_610--Hb_000566_050 Hb_000809_020 Hb_000809_020 Hb_000025_610--Hb_000809_020 Hb_001638_330 Hb_001638_330 Hb_000025_610--Hb_001638_330 Hb_003688_040 Hb_003688_040 Hb_000025_610--Hb_003688_040 Hb_001143_190 Hb_001143_190 Hb_000069_710--Hb_001143_190 Hb_000069_710--Hb_000352_120 Hb_001482_040 Hb_001482_040 Hb_000069_710--Hb_001482_040 Hb_000019_150 Hb_000019_150 Hb_000069_710--Hb_000019_150 Hb_000056_040 Hb_000056_040 Hb_000069_710--Hb_000056_040 Hb_000397_120 Hb_000397_120 Hb_000069_710--Hb_000397_120 Hb_001633_200 Hb_001633_200 Hb_121881_010--Hb_001633_200 Hb_000742_020 Hb_000742_020 Hb_121881_010--Hb_000742_020 Hb_000057_110 Hb_000057_110 Hb_121881_010--Hb_000057_110 Hb_006829_060 Hb_006829_060 Hb_121881_010--Hb_006829_060 Hb_000684_030 Hb_000684_030 Hb_121881_010--Hb_000684_030 Hb_000200_300 Hb_000200_300 Hb_121881_010--Hb_000200_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222413 0.0287038 0.479694 0.380796 0.132564 0.0604736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.123764 0.442657 0.0251568 0.245368

CAGE analysis